Ficedula albicollis (collared flycatcher): 101816812
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Entry
101816812 CDS
T02815
Name
(RefSeq) protocadherin beta-15-like
KO
K16494
protocadherin beta
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
fab04515
]
101816812
Cell adhesion molecules [BR:
fab04515
]
Cadherins
Protocadherins
101816812
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_C_2
Cadherin_2
Cadherin_CELSR2_9th
Big_9
DUF3313
Motif
Other DBs
NCBI-GeneID:
101816812
NCBI-ProteinID:
XP_016161043
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Position
Un
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AA seq
1166 aa
AA seq
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MCAAGRSWGRRQRALLWVILLMAWEAAWGQLRYSVPEEMPKGSFVGDVAKDLGLQLPEIR
DRGVHVLDKGRKQYFALHGKTGHLVTAERIDREQLCESVQQCMLGCELIVEGQMEVYGIQ
VEITDINDNAPSFRDTETVMKIIETAAPGSRFPLPDAHDPDSGRNSLQSYELSDDEHFSL
AVQAGPGGDQRPELVLAKALDREEAAFHELVLRAMDGGDPARTGTARIRVKVLDANDNAP
VFSQAEYTVRVPEDVPVGSVLVTVTATDADEGLNGEITYSLKKVSDRTSDIFHLDSECGS
ITLLRSLDYEEGDSYELQVQARDGGGLSDTAKVTIFVTDINDNAPEISVRSALNEISEDA
PMGTVVALLHVQDRDSGPNGAVGCSLDGDIPFRLEKSFDDYYRILVTVSALDRERTARYV
LGVTAADAGSPPLTSTHTFTVDISDVNDNAPVFNQTSYTMYVRENNAPTVFVGAVSAADA
DVGLNAKVTYSLAPVPAAERPSCSCISVNSENGHVFVLRPLDYERLRQSEVTVSASDAGS
PPLRANVTVRLVVLDENDNAPLVLYPAQDGSAASSELVPVSAEPGYLVTKVVAVDADSGQ
NSWLSYHLLRATEPGLFSVAVQSGEVRLKRPVTERDSAKHKLLVLVRDNGKPPLSATAAL
SALLLKDFSDVRLPHGSPPTDEQGDSLTTYLIIALVFVSLLFLISSALFVARKVCKSKEL
KAAHVLSGAHNLHSGLADAAAAGTLPRAYCYEISLTTGSGNSEFQFLKPILPSLPAQHCA
TGQGPQEQEQDFPCVPVSTEDMAPDNAGTLSARQFNEFPVGIKDADVGLNAKVTYSLAPV
PAAERPSCSCISVNSENGHVFVLRPLDYERLRQSEVTVSASDAGSPPLRANVTVRLVVLD
ENDNAPLVLYPAQDGSAASSELVPVSAEPGYLVTKVVAVDADSGQNSWLSYHLLRATEPG
LFSVAVQSGEVRLKRPVTERDSAKHKLLVLVRDNGKPPLSATAALSALLLKDFSDVRLPH
GSPPTDEQGDSLTTYLIIALVFVSLLFLISSALFVARKVCKSKELKAAHVLSGAHNLHSG
LADAAAAGTLPRAYCYEISLTTGSGNSEFQFLKPILPSLPAQHCATGQGPQEQEQDFSCV
PVSTEDVAPDNAGTLSARQFNALSLN
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcggcggggaggagctggggccggcggcagcgagctctgctctgggtgatcctg
ctgatggcgtgggaggcggcgtgggggcagctgcgctactcggtgcccgaggagatgccc
aagggctcgttcgtgggcgacgtggccaaggacctggggctgcagctgccggagatccga
gaccgtggcgttcatgtcttggacaaaggtaggaagcagtatttcgctctgcatgggaag
acgggccatttagtgacggcggagaggatcgacagagagcagctgtgcgagagtgttcag
caatgcatgctgggctgtgagctgatagtggagggacagatggaggtttacggaatccaa
gtggaaatcacggatataaacgacaacgcacccagcttccgagatactgaaacagtgatg
aaaattatcgaaacggcagccccgggatcgcggtttcctctacccgacgctcacgatcct
gactcgggccggaattccctgcagagctacgagctgagcgatgacgagcacttctcgctg
gccgtgcaggcgggccccggcggcgatcagcgtcccgagctggtgctggcgaaggcgctg
gaccgggaggaggcggcgtttcacgagctggtgctgagggcgatggacggcggcgatccg
gcacggacgggcacggctcggatccgagtgaaggtgctggacgcgaacgacaacgcgccc
gtgttcagccaggcggagtacacggtgcgcgtgcccgaggacgtgcccgtgggctccgtc
ctcgtcaccgtcacagccaccgacgccgacgagggtctgaacggggaaattacatactcg
ttgaaaaaagtgtccgacaggacatcggatattttccatctggactctgaatgtggatcg
atcactctattgcgaagcctggactatgaggaaggtgactcttatgaactgcaggtgcag
gcacgggacggcggaggcctttctgacactgccaaagtcacaatattcgtcacagacata
aacgataacgcaccagagatttctgtgcggtcagcgctaaatgagatctctgaggacgcc
ccaatgggtacagtggtcgccctgctccacgtgcaggaccgtgactctggaccgaacggt
gccgtgggctgctcgctcgacggagatatcccattccgcctggagaagtcttttgatgat
tactaccgaatcctggtgacagtgagcgcgctggaccgcgagcgcacggctcgctacgtg
ctcggtgtcacagccgcagatgcgggctcgccgcctctcacgagcacgcacaccttcacc
gtggacatctcggacgtcaatgacaacgcgcccgtcttcaaccagacctcctacaccatg
tacgtgcgggagaacaacgcgcccacggtgtttgtgggagccgtgagcgctgcagatgct
gacgtggggctcaatgccaaggtgacctactcgctggccccggtgccggcggcagagcgg
ccctcgtgctcctgcatctcggtgaactcggagaacggacacgtgtttgtgctgcggccg
ctggactacgagcgcttgcggcagagcgaggtgacggtcagcgcctctgacgcgggctct
cctcccctgcgagccaacgtcaccgtgcgcctcgtggtgctggacgagaacgacaacgcg
ccgctcgtgctctacccggcccaggacggcagcgcagcgtccagcgagctcgtgcccgtg
tcggctgagccgggctacctcgtcaccaaagtggtggccgtcgatgccgactccggacag
aactcctggctctcgtaccacctgctcagggccaccgagcccggcctgttcagcgtggct
gtgcagagcggcgaggtgcgtctcaagaggccggtgacggagagggacagcgccaagcac
aagctcctcgtcctggtcagggacaacggcaagcccccgctgtcagccaccgcggctctg
agcgcgctcctgctcaaggacttctccgacgtgcgcctcccgcacggcagcccgcccacg
gacgagcagggcgactccctgaccacctatttaatcattgccttggtctttgtctcgctc
ctcttcctcatctcctccgcgctctttgtggctcgcaaggtgtgcaagagcaaggagctg
aaggctgcccatgtgctttctggtgcccacaacttgcacagcggcctggccgatgcagcc
gctgcagggaccctgccccgcgcctattgctacgagatcagcctcaccacgggctcgggc
aacagcgagttccagttcctcaagcccatcctgcccagcctgccagcacagcactgcgcc
acgggccagggcccccaggaacaggagcaggatttcccctgtgtgcctgtcagcacagag
gacatggcaccagacaatgctgggactctctctgcacgacagttcaacgaattccctgtt
ggaataaaagatgctgacgtggggctcaatgccaaggtgacctactcgctggccccggtg
ccggcggcagagcggccctcgtgctcctgcatctcggtgaactcggagaacggacacgtg
tttgtgctgcggccgctggactacgagcgcttgcggcagagcgaggtgacggtcagcgcc
tctgacgcgggctctcctcccctgcgagccaacgtcaccgtgcgcctcgtggtgctggac
gagaacgacaacgcgccgctcgtgctctacccggcccaggacggcagcgcagcgtccagc
gagctcgtgcccgtgtcggctgagccgggctacctcgtcaccaaagtggtggccgtcgat
gccgactccggacagaactcctggctctcgtaccacctgctcagggccaccgagcccggc
ctgttcagcgtggctgtgcagagcggcgaggtgcgtctcaagaggccggtgacggagagg
gacagcgccaagcacaagctcctcgtcctggtcagggacaacggcaagcccccgctgtca
gccaccgcggctctgagcgcgctcctgctcaaggacttctccgacgtgcgcctcccgcac
ggcagcccgcccacggacgagcagggcgactccctgaccacctatttaatcattgccttg
gtctttgtctcgctcctcttcctcatctcctccgcgctctttgtggctcgcaaggtgtgc
aagagcaaggagctgaaggctgcccatgtgctttctggtgcccacaacttgcacagcggc
ctggccgatgcagccgctgcagggaccctgccccgcgcctattgctacgagatcagcctc
accacgggctcgggcaacagcgagttccagttcctcaagcccatcctgcccagcctgcca
gcacagcactgcgccacgggccagggcccccaggaacaggagcaggatttctcctgtgtg
cctgtcagcacagaggacgtggcaccagacaatgctgggactctctctgcacgacagttc
aacgctctttccttgaactag
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