Ficedula albicollis (collared flycatcher): 101817407
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Entry
101817407 CDS
T02815
Symbol
PATL1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101817407 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101817407 (PATL1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101817407 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
101817407 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
101817407
NCBI-ProteinID:
XP_005046615
LinkDB
All DBs
Position
5:complement(8613681..>8620043)
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AA seq
765 aa
AA seq
DB search
PCSRLSQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELED
KAGLSREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGL
NSSIWDSSAVLRRIRGPLLAQDMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPI
IGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPTAYGERMSPNQLCNVP
NSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQG
RVGQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPHMFRPDTTHLHPQHRR
LLHQRQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQS
TDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLG
KLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRY
LLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPF
LSPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLP
QSASAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNAELMQDNQWTELMLMATREL
LRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
ccctgttcccggctgtcccagtccctggaggactgcccactggacgaggatgaagatgcc
ttccaggccctgggggaggaggacgaagacatcgaccagttcaacgatgacaccttcggg
gccggggccgtcgatgacgactggcaggaggcccacgagcggctggcggagctggaggac
aaggccgggctgagccgggagccggacgggcccgttgggaatgacggggacgttctgggc
gaccccgaggacgcgctggccgagcggctcacgcgcctcgtcatcgacagcgagctggag
gacccggccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctg
aattccagcatctgggacagctcggccgtgctgcggcggatccgggggccgctcctcgct
caggacatgccatcggtgtccgtgctggattatgccctgccccagaggcctccgcaggct
cgggatgaggagcgggatccatcggagcgggcgctgccccggcgctcctcgtcccccatc
atcgggagccccccagtgcgggccgttcccattggcaccccccccaaacaggccgccatc
ccaaacttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcag
cagcgttatcccactgcctatggagagaggatgtcccccaaccagctctgcaatgttccg
aattcctccctcctgggtcacccattcccccacagcgtctctcctgttctcacacacctg
cagagagcccagctactcggaggagcccaggctggccgaatgtcccccagccagtttgcc
cgggtgtcggggctggtggggagcccgctgccctccgtgaatcccaagctgctgcagggc
agagttgggcagatgatgtccccggccggagggttccgtgcctttttcggggctccccct
gccccgcccccctcgcagctgccgcaccctccgggccccggatcccacctgcagaacctg
aggccgcagccccacatgttccggccggacacgacccatctgcacccgcagcaccgccgg
ctcctgcaccagcggcagcagaaccgcaaccagcaccggagcctcaacggctctgggggg
gaccgagggggccaccggagcagccatcaggagcagatccgtaaggatccctatgccaac
ctcatgttgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagc
actgatccctacctggatgattattattatcagaattacttccagaagctggagaaatta
gcagctgccgaggaagtgcacggggatggtcccaagaaggagcgcactaaactcatcacc
cctcaggtggccaagctggaacacacctacaagccagtgcagtttgagggctcgctggga
aaactcaccgtctccagtgtcaacaacccccggaagatgatcgacgccgtggtgacatcc
cgcagcgaggatgatgagacgaaggagaagcaggtccgggataagaggcgacagaccctc
gtcaccattgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctac
ctcctgagcctggaaggggagcggccagccctgatgggagagaggaagcagaagatctgt
gacatgtatgacaatctgaggggaaaagcacctgggcaggacaggccgagtgatgaccac
ttcatgcagatcatgtgcatccggaaaggaaagcgcctggtggctcggatccttcccttc
ctgtctccagagcaagcggccgacgtgctcatggccacggccaggaacctgcccttcctc
atcaagaaggatgctcaggatgaggtgcttccctgcctcctgaggcccttttcccacgtc
ctctaccaccttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacct
cagagcgcctccgctcccaccaacctgcacctcactgctgtgctccaaaacaagttcggt
ctgtccctgctgtacctggtcctgagccgaggggaggaattgcaaagctcggacacgaac
gcagagctgatgcaggacaaccaatggacggagctgatgctgatggcgacccgggagctc
ctgcggatccctcagggagccctggcaaagcctgtgtccatcccctccaacttgatctcc
ctcttctctcgctacgttgaccagcagaagctgaacctgctggagacgaaattgcactta
gtgcaggggatccggtag
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