Ficedula albicollis (collared flycatcher): 101817622
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Entry
101817622 CDS
T02815
Symbol
SRRM1
Name
(RefSeq) serine and arginine repetitive matrix 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101817622 (SRRM1)
03015 mRNA surveillance pathway
101817622 (SRRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101817622 (SRRM1)
03041 Spliceosome [BR:
fab03041
]
101817622 (SRRM1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101817622 (SRRM1)
Spliceosome [BR:
fab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
101817622 (SRRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
BAF1_ABF1
FliX
Motif
Other DBs
NCBI-GeneID:
101817622
NCBI-ProteinID:
XP_016159202
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All DBs
Position
23:6661862..6678841
Genome browser
AA seq
848 aa
AA seq
DB search
MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAR
EFMGELWPLLLSAQENIAGIPTAFLELKKEEIKQRQIEQEKLASMKKQDEDKEKRDKEDK
DNREKRDRSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPHHRTKSRSATPAPEKKEAT
PEPEPSVKPKETVVQEATSNSDIPKAPKPEPPVPETKETSPERNSKKEREKEKEKTRQRS
PTRSKSRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRRPSPRRRSPPRRMPPPPRHRRSRS
PVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRPRPVSSPPRKTRRLSPPPPPPPPPPP
PPPPGSPPAKARRSPSPPPSNRARKSRASASPARPAAPKHKSTEKRESPSPAPKPRKAEL
SESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEEERPKRSNVKNGEVGRRRR
HSHSRSPSPSPRRRQKDSSPRRRRRSPSPPPARRRRSPSPAPPPRRRRSPSPPRRRSPSP
PPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHSPPPKQR
SSPTAKRRSPSESSKHRKGSPPSRSNRETRSPPQNKRHSPSPRPRASHPSSSPAPPRRGA
SASPQRRQSPSPSSRPIRRVSRTPEPKKTKASTPSPRRVSSSRSASGSPETAPKKHQGPA
SPARSRSPSANWSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKH
KKEKAAAAAAAAAVAAADTTSAQGEQETETEPKKETESEPEDNLDDLEKHLREKALRSMR
KAQVSPPS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagtaaatctggaagtaatcaaaccatggataacaaaacgagtaacagaaatc
cttggatttgaagatgatgtagtaattgaatttatattcaaccagttggaagtgaagaac
ccagattccaaaatgatgcaaatcaacctgactggttttttgaatgggaaaaatgctagg
gagttcatgggagaactgtggccactgctattaagtgcacaagaaaacattgctggtatt
ccaactgcatttctggaactgaagaaagaagaaataaaacaacgacagatagagcaggag
aaactggcttccatgaagaaacaagatgaagacaaagagaagagagataaggaagacaaa
gacaacagagagaaaagagacagatccaggagtccaagaaggcgcaagtcccgctctccc
tccccgcggcgccgctcctcacccgtgcgccgcgagcggaagcgcagccactcgcgctcc
ccccaccaccgcaccaagagccgcagtgccacccctgcccccgagaagaaagaggccact
cctgagccagagccctccgtgaaaccaaaggagactgttgtgcaagaggcaacttcgaac
agtgatatcccaaaagctcctaaacctgaacctcctgtaccagagactaaggaaacttca
ccagaacgtaattcaaagaaggagagggagaaggagaaggagaagactcgtcagagatcc
ccaactcggtccaagtccaggtcaagatcccgatcccgttctccatctcattctcggccc
agaaggcgccatagatcacggtcaagaaggcgacccagcccgcggcgccggccgtccccg
cgcaggaggagcccgccccggagaatgcctcccccacccaggcacaggaggagcagatcc
cccgtcaggcggagaagacgctcctcggcctcgctgtccggcagcagctcctcctcgtcc
tcgtcgcgctcccgctctccaccaaagaagcctcccaagcgaccccgacccgtgtccagc
cccccgcgcaaaacgcgccgcctgtccccccccccccccccccccccccccccccccccc
ccccccccccccggcagccccccggccaaagcgcgccgctcgccctcgcccccgccctcc
aaccgcgcccgcaagagccgcgcctccgcctcgcccgccaggcctgcagcgcccaaacat
aagagtactgagaaaagagaatctccttcgccagcacccaagcccaggaaagcagagttg
tcggaatcagaagaagacaaaggaggcaaaatggctgcagcagattctgtccaacagagg
cgccagtacaggaggcaaaatcagcagtcttcatctgattctggttcttcatcttcctca
gaagaggagaggcccaagaggtcgaacgtgaagaacggggaggtgggccggcgccgccgg
cactcgcactcgcgcagcccctcgccctcgccgcgccggcgccagaaggattcctcccct
cgcaggaggaggaggagcccctcgccgccccccgcgcgccggcgccgctccccttccccg
gccccgccgccccggcgccgccgctcgccgtccccgccccgccgcaggtctccatctccc
cccccgcgcagacgttctccctccccacggagatactcccccccgatccagaggagatat
tccccatctccccctcccaaaaggagaacagcctctcctcctccccctcccaaaagaagg
gcctccccttccccccagtccaagcgcagagtctcccactccccaccgccaaaacagagg
agctccccgaccgcgaagcggcgctccccttccgaatcttccaagcacaggaaggggtct
cctcccagcagatccaacagggaaacacgttctccaccccaaaacaaaaggcattcacct
tcaccacggcctcgagcttcccacccctcgtccagccccgcgccgccgcgccggggagcg
tcggcgtcgccgcagaggagacagtcgccctcccccagcagccggcccatcaggagggtg
tccagaacaccagaacccaagaaaacaaaggcttccacccccagcccccggcgcgtgtcc
tcgtcccgctctgcgtcaggctcacctgagacagctcccaaaaagcaccaaggacctgca
tctcctgcccgctctcgctctccttctgcaaactggtcacctgcaaaaaaggccaagagc
ccaactcagagcccatcacctgccaggaactcagatcaagaaggtggtggcaagaagaag
aagaaaaagaaggataagaagcataaaaaggataaaaagcacaagaaacacaaaaagcat
aagaaggagaaggcagcagcagctgcagcagctgctgctgtggctgcagcagacaccacc
tcagcacagggagagcaggaaacagagacagaacccaaaaaggagacagaaagtgaacct
gaggacaacctggatgacctagaaaagcacctgagggagaaggccctgaggtccatgagg
aaggcgcaggtgtcccccccctcctag
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