Ficedula albicollis (collared flycatcher): 101817774
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Entry
101817774 CDS
T02815
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101817774
04518 Integrin signaling
101817774
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101817774
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101817774
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101817774
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COLFI
Collagen
Motif
Other DBs
NCBI-GeneID:
101817774
NCBI-ProteinID:
XP_016160939
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
GGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGA
PGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGF
TGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRGGX
GGGGGGGGGGGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEV
DATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGEREAPALSPPVSTPLVDLK
TSKTWKFWRLAVTPTPLWASKPQEFPPKXKPIXGQANPRNSPQTKPIXGPPSRPQFSYGA
EELAPNTANIQMTFLRLLSSEGSQNLTYHCRNSVAYLDGDSGSLRKALLIQGSNDVEIRA
EGNSRFTYSVLEDGCAVRAGARRSRG
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gggggaccccccgggcccgtgggacccccggggctgacgggacctgctggagagcccggc
agggagggaaatcccggctctgacggacccccgggcagggatggggcggccggagtgaag
ggcgatcgtggcgagaccggccccgtgggcgctcccggcgctcccggtgctcctggcgct
cccggccccgtgggacccactggaaaacagggagacagaggagagacgggtgctcagggt
cccatgggtccctccggccctgctggcgctcgggggatgccgggtccccaggggccgcgc
ggtgacaaaggcgaggcgggcgaggcgggcgagcgcggcctgaagggtcaccggggcttc
accgggctccaggggctgcccgggcctcccggtccctccggagaccagggcgctgccggg
cccgcgggcccctccgggcccaggggtccccccggccccgtgggtccctcaggcaaggac
ggctccaatgggatgcccggacccatcggcccccctggcccccgtgggagggggggnnng
gggggggggggggggggggggggggggggggggccgcccggcccccccgggccccccggc
accggcatcgacatgtcggcgttcgcggggctggggcagcccgagaagggccccgacccc
gggcgctacatgcgggcggacgaggcggcgccggggctgcggccgcacgacgccgaggtg
gacgccacgctcaaggccctcaacaaccagatcgagagcatccgcagccccgagggctcc
cgcaagaacccggccaggacctgccgagacatcaaactctgccaccccgactggaagagc
ggtgagagagaggctccagccctgagtccacccgtgtccaccccactggttgatttaaag
acgtccaagacgtggaaattttggcgtctggccgtgacacccacacccctgtgggcgagc
aaaccccaggaattccccccaaaataaaaacccatctgaggacaagcaaaccccaggaat
tccccccaaacaaaacccatctgagggcctccctcccgcccgcagttcagctacggcgct
gaggagctggcgcccaacacggccaacatccagatgacgttcctgcggctgctgtccagc
gagggctcgcagaacctcacctaccactgccgcaacagcgtggcctacctggacggcgac
tcgggcagcctgaggaaggcgctgctcatccagggctccaacgacgtcgagatccgcgcc
gagggcaacagccgcttcacctacagcgtgctggaggacggctgcgcggtgcgtgccggg
gcgcggcgctcccggggttaa
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