Ficedula albicollis (collared flycatcher): 101817906
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Entry
101817906 CDS
T02815
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101817906
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101817906
Spliceosome [BR:
fab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101817906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
AAA_22
ATPase
PhoH
Ank_4
AAA_23
ResIII
Ank
UvrD-helicase
AAA_16
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
101817906
NCBI-ProteinID:
XP_005061976
LinkDB
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Position
Un
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AA seq
1372 aa
AA seq
DB search
MRISISKMEFPSSFTSTERAYVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSELTHAVMT
CDLALHTKHAVRSLIQSFPVTNKERTELLPRTERGNACAVESENKEVNKTSGRLNDGIPQ
IPVKRGESEFDSFRQSLPVLEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYK
NGTPCRVFCTQPRRLAAVAVAERVAAERKEKIGQTIGYQIRLESRVSPKTLVTFCTNDML
LRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQTNLKLIISSAALDANLF
IRYFGSCPVIHIQGRAFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKSTLAEWCS
AQENTHKLASRRQKSVPRANEEYKWLDDGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDI
WLHKDIDSFAQVFHLILTENVSVDYRHSETGATALMISAGRGFLSQVEQLISMGASIHCK
SSNGWMAVDWARRFGQTEVIDLLESYSASFGFGNLDESSLVQKSGSDLSAEDRELLTAYH
HSFDDEKVDLDLIMHLLNSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNANRY
QVFLLHSSVQTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDA
LSRVTMLKMGWISKASAVQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQCPELLRMPLQEI
CLYTKLLAPTNCPIVDFLMRAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELP
VEPHLGKMVLYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSD
HMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGA
DIRDVNTNSENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKK
IAPANGQAAAIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVALFCGPARLPSNALQA
SSSFRGGGASNDSSDSEMEDKTIANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLR
RMRAPSKPWSQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKST
NSRKNSTETELSDSSNAEKVSVKSTSPALHQPKKYKEKDVLLAKRSSDDRSSQSSVKPAD
SSPCASPSSPISGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPNNERKLN
GAFWESSMVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKEIIPF
QFAHHLLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgcgtataagtatatccaagatggaatttccttctagtttcactagtactgaaagagcg
tatgttcatcggctctgtcagtctcttggactggtgtctaaaagcaaaggaaaaggagcc
aatcgatacctgactgtaaggaagaaggatgtatcagaactgacacatgcagtcatgact
tgtgacttggcgctccatacgaaacatgctgttcggagtctaattcagagctttcctgtc
acaaataaagaacggacagagctcctgccaaggacagagcgaggaaatgcttgtgctgtt
gaatctgaaaacaaagaagtgaacaagacaagtggtcgacttaatgatggtattccccag
atcccagtgaaaagaggggaatcagagtttgattccttcaggcaatcactaccagttctt
gaaaaacaggaagaaatcgtccaaataataaaggacaataaaattgttttgattatagga
gagactggatcaggaaaaactactcaaatccctcagtttatccttgatgactgctacaag
aatggaactccctgtcgtgtgttttgtactcagccaagacgtttagcagctgttgctgtg
gctgaaagagtggcagcagaaagaaaagagaagattggtcagacaattggttaccagatc
cgcttagaaagcagggtttctccaaagacactggtaacattctgcactaatgacatgctc
cttcgcacgctgatggcaggagacagcaccctctccactgtgacccatgttattgtggat
gaagtacatgagagggataggttcagtgacttcctgctaataaaactgagagatgtgctg
caaaaccaaactaatttaaaattaattatttctagtgctgctctagatgcaaatctcttt
attaggtattttggaagctgcccagtaatacatattcaaggaagagcttttgaagttaaa
gagatgtttctggaggacattttacgaagcactgggtatacaaacaaagagatggtaaag
tacaaaaaagagaagcagcaagaagagaagcagaagagcactcttgctgagtggtgttcc
gctcaagaaaacactcacaaactggcatctcggaggcaaaaatcggttccaagggcaaat
gaagagtacaagtggttggatgatggtggtgacacagtatttaatcaacttaccgagaaa
gatgtgaattgccttgaaccgtggatagtaaaagaaatggattcctgtctttctgacatc
tggttgcataaagatattgattcctttgctcaggtgttccatcttattttaactgaaaat
gtcagtgttgattataggcacagtgaaactggtgcaactgctctgatgatttctgcaggg
agaggctttttgagtcaagtagaacagctgatcagcatgggagcaagtatccactgcaaa
tcatccaatggctggatggctgtggactgggctaggcgttttggacagactgaggttatt
gatctgttggaatcctacagtgcttcattcggatttggaaatctggatgaaagttccctg
gtccaaaaaagtggtagtgaccttagtgcagaggacagagaactactgacagcttatcat
cacagttttgatgatgaaaaagtggatctggatctgataatgcacttacttaacagcatc
tgtcatagctgtgatgcaggagcaattttaatatttctccctggatatgatgagatagtg
agcctgagggaccgcattctttttgatgacaagagatttgctgataatgctaacagatac
caagttttcttgcttcattcgagtgtgcagactttggatcagaagaaagtgcttgaaact
ccaccttctggcatccgcaaaattattctttctactaatattgcggaaacaagcataact
gttaatgatgttgtgtttgtcattgactcaggcaaggtgaaagagaagtcttttgatgca
ctgagtcgtgttacaatgctaaaaatggggtggatttcaaaagccagtgctgtccagaga
aaaggaagggctgggcgctgtcagcctggagtctgttttcgtctcttcagcagactccga
tttcagaatatgttggaatttcaatgtccagaacttctaagaatgccgcttcaggagatt
tgtttgtacacaaaacttctggctccaactaactgtccaattgtagacttccttatgaga
gctcctgatcctccacctgctgtaactgtgagaaatgctgtgcatatgcttaagaccata
gatgccatggacccttgggaagatctcactgagcttggttatcacctcactgaattacct
gtagagccacatctcggtaaaatggtgttgtatgccgtagttctgaagtgcctggatcct
gttctgaccattgcctgtgctcttgcctgccaagacccttttgtgctgcccacgctggcc
tcccaaaagcgtgcagccatgctgtgcaggaagcgttttgctgcagggacgttcagtgac
cacatggccctgctcagggctttccaggcatggcagaaggcacgcagtgatggctgggag
agagccttctgtgaaaagaacttcctatcccaagccacaatggaaatcatcgtaggaatg
agaacacagttgcttggccagcttagagcctcaggttttgtgagagccagaggaggagct
gatattagagatgtcaatactaactctgagaactgggctgtaattaaagctgccttagtg
gccgggatgtatcccaatcttgtgcatgtagacagagaaagcctggttttgactgaacca
aaagagaagaaagtgcgatttcatcctacctctgttcttggtcaatctcagtataaaaag
attgccccagcaaatggacaagctgcagccatccaggccctccctacagactggcttata
tatgatgaaatgacgagagctcacaagacagcaaacatcaggtgctgctctgttgtgaca
cctgtcactgtggccctcttctgtggaccagccagactgccaagtaatgccttgcaggca
tcttcatcctttcgagggggaggggcatctaatgatagcagtgacagtgagatggaggac
aaaacaattgctaatctggcactactgaagctggatgaatggctccatctcaaactggac
cctgaagctgctggaatgctgttgcaactcaggcagaagtggcacagtttgttcctgcgt
cgtatgcgagctccttctaaaccgtggtctcaggttgatgaaacaactgtaagagcaatt
acagctgttctgagtgctgaagaacagtctgcaggtctgcagcagccttcaggaattggc
cagagaccaagacctgtgacttgtgaagaacttcctttggcatctacatggaagtcaacc
aacagcagaaaaaactcaacagaaactgaattgtctgactcttctaatgctgaaaaggtt
tcagtgaaatctacatctcccgcactccaccagccaaagaagtacaaagaaaaagacgtt
ttgctcgccaaacgatcctcagatgacagatcatctcagtcctcagtgaagcctgcagac
agcagcccctgtgctagtccttcttctccaatatctggaaagggttgcaaatctccttca
ccaagacaaaacatgccagttcgatactttataatgaaaagtagcaacttgcagaacatt
gatatttctcaacagaagggaatatggtccactacaccaaataatgaacgaaaactgaat
ggagctttttgggagagcagcatggtttacttaatattttctgttcaagggtctggatgc
tttcagggttttgctagaatgggttcagctatcgggtgtgagaaaagtcaagactgggga
tctgctggttttggaggtgtatttaaggttgactggatccgaaaagaaatcattcctttt
cagtttgcacaccatttgctcaacccatggaacgacagtaagaaagtacagataagtaga
gatggccaggagctggaaccacaagttggcgagcagttgctgcagctttgggaccgtatt
cctttggcaggaaaaaaactgactgagcatgccaagtaa
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