Ficedula albicollis (collared flycatcher): 101818132
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Entry
101818132 CDS
T02815
Symbol
PCDH12
Name
(RefSeq) protocadherin 12
KO
K16499
protocadherin delta 2
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
fab04515
]
101818132 (PCDH12)
Cell adhesion molecules [BR:
fab04515
]
Cadherins
Protocadherins
101818132 (PCDH12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
101818132
NCBI-ProteinID:
XP_016157031
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All DBs
Position
13:complement(17154324..17169694)
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AA seq
1239 aa
AA seq
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MTAFEDLQLRRGARNDLLALLSASHHGAHGGLEARREPAGVTAVSGWDGREIGRASQVTA
VSGWDGRALPHEPPPRPGIGAGQPVAARRGRGGSAGSVLGLSRSALPLPALWWWYLFLSA
DAQEVATFTVQYRVLEEVPPGTVIGSLAEHFEGAESGEAAETFQLMETPGRFPLHVGGGD
GVLSTAGRVDREQLCRHSDPCWVSFDVLAAQSPALIHVEVQVMDVNDNAPRFPTAELELE
ISESASLRTRIPLDRALDADAGPNARCSYALSPSQHFALEVVSGSDGTRHAELVVVKEVD
RELHSSFHLVLTATDHGEPPKSGTALIKVVVLDSNDNSPVFAESSLTVEVREDAQPGTLL
VTVTATDPDQGPNGEIEYSLSRHAPPEVLRTFSIDARTGSVLLRLPLDYEETHAYQLDVQ
ARDLGANPIPAHCKVLVKVLDVNDNAPDVRVTWAARVPVLSEALPKDSFVALVTASDPDS
GSNGQVLCSLSQGHEHFRLKRTNSHSFALLTNAALDRERRAEYNLTLVVRDMGELSLAVL
KHLTICISDVNDNAPAFEKAAYEAAVAENSDAPAFLLTVRATDPDLGFNGKVTYRMLDPS
ALGLVSVDPISGDVFALQAFDYEQVRSLEFLVTAEDGGHPKLASNISVRLAVLDRNDNAP
VITWPALLGGVATLSVLVNVDTGCCWVVPGNGSTQGAAAVTNSTLVSCPGSPLLFTIVAR
DVDSGTNGALRYDLVGGDGAGLFTLDPLLGQVSLNASNASSLAGSQRELLVRVSDQGDTP
LHTLARLRLLFRRHGSFSKMSARDPGWPSLPVVLLICLAALLGGCLLLLALTLSLRKKDK
KDGMAYNCREAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPREPEPPQPCQEEQPGAPA
PPQAPLHLTPTLYRTLRNQRTQKGSEEQQGTLELPLLQRRPCQPHRPKQPGKEAVTPPEA
PLHGKSLVKPPVGEPPVPPEPALGAGGAGQPQPHQQILRSLVRLSLVALAEQSLTGEFAM
ESPPVQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSRAAGLDTGLDTGLDTGLDTDCLS
TKDSGHGESEAGDRDCDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPEWVARLSL
PLTSSYKDNIFSPDSPCSPEDEEAARQEKPRTFETFGKGAEAGPGGSGTRLASTFLSEMS
SLFEMILSQKVQGHGEAGLLRQLSARGHSLGLGDAAPGL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgtttgaagatctccagctgcgccgtggagctcgaaatgacctgctggcgctg
ctctccgccagccaccacggtgcccatggaggtcttgaagcacgtcgggagcctgccggg
gtgacagcggtgtcgggctgggacgggagggagatcggaagagcgtcgcaggtgacagcg
gtgtcgggctgggacgggagggcacttccacacgagcccccaccccgccccggcattggg
gcgggacagcccgtggcagcgcggcggggccgcgggggctctgcgggcagcgtgctgggg
ctgagccgctcggcgctgccgctgccggcgctctggtggtggtacctgttcctgagcgcc
gacgcccaggaggtggccacgttcaccgtgcagtaccgcgtgctggaggaggtgcccccg
ggcaccgtcatagggagcctggccgagcacttcgagggtgctgagagcggcgaggcggcc
gagaccttccagctgatggagacccccgggaggttccctctgcacgtgggcggcggggac
ggggtgctcagcacggccgggagggtggacagggagcagctgtgccgccacagtgatccc
tgctgggtgtccttcgacgtgctggccgcccagagcccggccctgatccacgtggaggtt
caggtgatggacgtcaacgacaacgcgccgcgcttccccacggccgagctggagctggag
atctcggagagcgcgtccctgcgcacgcggatcccgctggaccgagccctggacgctgac
gccggccccaacgcccgctgctcctacgccctctcccccagccagcactttgctctggag
gtggtctccggctccgatgggacgaggcacgccgagctcgtcgtggtgaaggaggtggac
agggagctgcactcctccttccacctggtgctgacggccaccgatcacggggagccgccg
aaatcggggaccgctttgattaaagtcgtcgtcctggactccaacgacaacagccccgtg
ttcgcggagagctccctgacggtggaggttcgggaggacgcccagcccggcaccctcctg
gtgacggtgacggccacggaccccgaccagggtcccaacggggagatcgagtacagcctg
agcaggcacgcgccccccgaggtgctgcgcaccttcagcatcgacgcgcgcacgggcagc
gtgctcctgaggctgcctctggactacgaggagacccacgcctaccagctggacgtgcag
gcgcgggacctgggcgccaaccccatccccgcgcactgcaaggtcctggtcaaggtcctg
gacgtcaacgacaacgctcccgacgtccgcgtcacctgggccgcgcgcgtgcccgtgctg
tccgaggccctccccaaggacagcttcgtggccctggtgacagccagcgaccccgactcg
gggagcaacgggcaggtgctctgctccctcagccagggccacgagcacttcaggctgaag
agaaccaacagccacagcttcgcgctgctgaccaacgccgcgctggaccgcgagcggcgc
gccgagtacaacctgacgctggtggtgcgggacatgggggagctgtcgctggccgtgctg
aaacacctcaccatctgcatcagtgatgtcaacgacaacgcccctgccttcgagaaggcc
gcctacgaggctgctgtggctgagaacagcgacgctcctgccttcctgctcaccgtccgt
gccaccgaccccgacctgggcttcaacggcaaggtcacctacaggatgctggacccctca
gctctggggctggtctcggtcgaccccatctctggggatgtttttgccctccaagctttt
gattacgagcaggtgaggagcctggagttcctggtgacagcggaggatggaggccatccc
aagctggcatccaacatctccgtcaggctggctgtgctcgaccggaatgacaacgcaccc
gtcatcacctggccagcgctgttgggaggggtggccacgctctctgtgctggtcaatgtg
gacactgggtgctgctgggtggtccctgggaatgggagcacccagggggctgcagcagtg
accaattccactctcgtgtcgtgccccggcagccccctcctgttcaccatcgtggccagg
gatgtggactccggcaccaacggggctctccgctatgatctggtgggtggggacggagcc
gggctcttcaccctggaccccctcctggggcaggtgtccctcaacgccagcaatgccagc
agcctggcgggcagccagcgggagctgctggtgcgggtgagtgaccagggggacaccccc
ctgcacaccctggcccggctccgtttgcttttccggcggcacgggtccttctccaagatg
tcagcgcgggatcccggctggcccagcctgcccgtggtgctgctgatctgcctggccgct
ctgctgggcgggtgcctgctgctgctggcgctgaccctgtccctgcgcaagaaggacaag
aaggacggcatggcttacaactgccgggaggcagaggacgcccgcaggcagcagcagctc
aagaagccgcacaggcagatccagaaggccgatatccacctggtccctctgctgcgggga
cgcccccgggagcctgagcccccccagccctgccaggaggagcagcctggcgcacctgca
cccccacaggctcccctccacctcacacccactctctacaggaccctgaggaatcagagg
acacagaaaggctccgaggagcagcagggcaccttggagctgcccctcctgcagcgccgg
ccgtgccagccccaccgacccaaacagccggggaaggaggctgtgaccccccccgaggcg
ccgctgcacggcaagagcttggtgaagccacccgtgggagagcccccggtgccacccgag
ccagccctgggtgcagggggagcggggcagccccagccccaccagcagatcctcaggagc
ctggtgcggctgtcgctggtggccctggcggagcagagcctcaccggcgagttcgccatg
gagtcgcccccagtgcagcaaatctcccagctgctctccctgctgcaccagggccagttc
cagcccaaaacaaactacagaggaaacaagtacactgccaagaacggcagcagggctgca
gggctggacacggggctggacacggggctggacacggggctggacacagactgcctgagc
accaaggacagcgggcacggcgagagcgaggccggcgaccgcgactgcgacagcgccttc
gagctctcggtgcagcagctggtgggagaggagctggagaccctcctggagccacaggca
gagctggccctcaagaggctgacagctgcagacccagagtgggtggcccggctgtccctg
cccctgaccagcagctacaaggacaacatcttctccccggactcaccctgctcccccgag
gacgaggaggctgcgaggcaggagaaacccaggacctttgagacctttggcaaaggtgct
gaggctggccctggtggctctgggacgaggctggccagcacctttctgtccgagatgagc
agcctgtttgagatgatcctgtcccagaaggtgcaggggcacggcgaggcagggctgctg
cggcagctctcggcccgcgggcacagcctggggctgggggatgctgctccagggctgtag
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