Ficedula albicollis (collared flycatcher): 101818295
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Entry
101818295 CDS
T02815
Symbol
GEN1
Name
(RefSeq) GEN1, Holliday junction 5' flap endonuclease
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101818295 (GEN1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101818295 (GEN1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
Motif
Other DBs
NCBI-GeneID:
101818295
NCBI-ProteinID:
XP_016153066
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Position
3:105493203..105511389
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AA seq
909 aa
AA seq
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MGVTYLWQILEPVRQPVNMSSLRGKTLAVDLSLWVCEAQTVKKMVGVVTKPHLRNLFFRF
SFFTSMGIKLVFVMEGEAPRLKADTMSKRNEMRYGPSKKAVPVRTGRSLFKAVLKECLEL
LECLGVPWVQAAGEAEAMCAYLNAKGLVDGCITNDGDVFLYGAQTVYRNFAMNAKDPHLD
SYTMSSIKEKLGCDRESLIGLAVLLGCDYLPKGVPGVGKEQALKLIETLRGQNLLQRFEQ
WKEQFQYDDNPPVVVKRVIHCSECHHPGSYKEHEHNGCKFCENMRCCKPSDSKHCCPCAW
HQWEQVKQANAVEESIRKKAKSCEGFPFSEVIQEFLVNKNKLTNIKECRRPNLLSFQLFA
SEKMEWTKHYACKKLLALLTRYDMIQRKSGYIDSKQLQAIRIVKTRIKNGIPCFEIEWQK
PEHYVDPEDEPVELFVVTLEEESLFQAAYPDVVALYQMEKSEVLQKKQKKKKDRPEEKHS
MSDTKAPPEDQTQQRSTGSKDVALPSTSCTSTVHVSASAAALADSSVPSQCTNYSEMSSS
SSLPAGLQLSTADGKGTSFSTSPAHGGADHDPAADFTTCIKHSHPLSHETVRNSSEYSDV
TQSDMHSGSEDDLFSNDAMAQLQERSLSERILKKAPISSQPFSESLVQLKSLNCFKQSKE
TLNPDRNHVSSSCQLNNLVQESKNVLSQNSATESSVRIYQDAYKKADILAEMVKKNPYIS
GAACLAFSGQTTETLLPGCEMLPASQKPAGATGCHVKAACIETTWKASLKKSVCQNRCSS
SEDSDDGHVDKILVYDQQKRQLNPGQFKKSFTKKRSSVVTSKRTNSDSALIIKGKKKSTN
LKEAANSFSVQVSLKPSSVEEVNCSQSPEQPIEKLGSPTEQDKSAVLTSAWADSPLPLSE
RLKGRIKIN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgacttatctgtggcaaatccttgagcctgtgagacaacctgtcaacatgagt
agtctcagagggaaaacacttgctgttgatttaagtttgtgggtttgtgaagcacagact
gttaaaaaaatggttggagtggttaccaagccacatctcagaaacctgttttttcggttc
tccttctttacatcaatgggaattaaacttgtatttgtcatggagggagaggcccccagg
ttgaaagcagacaccatgagcaagaggaatgagatgcgctatgggccttcgaaaaaagct
gtacctgtaaggacagggagatcattatttaaagctgtgttaaaagagtgtcttgaactg
ctggagtgtttaggtgtcccttgggttcaagcagctggagaagcagaggcaatgtgtgcc
tacctaaatgcaaaaggacttgttgatggctgcattaccaatgatggagatgttttcttg
tatggagctcaaacagtttataggaactttgccatgaatgctaaggatccacaccttgac
agttacacaatgtcctctattaaagagaaacttggttgtgacagagagtctttgattggg
ctagcagttcttctgggctgtgattatcttccaaagggggttccaggagtagggaaggaa
caagctttaaagttaattgagactctgcgaggtcaaaacttactgcaaaggtttgagcag
tggaaggaacaatttcaatatgatgataatccacctgtggttgttaaaagggtaattcac
tgttcagagtgccaccatccaggatcctacaaggaacatgagcacaatggatgtaaattc
tgtgaaaacatgagatgctgcaaacccagtgactccaaacactgctgcccttgtgcatgg
catcagtgggagcaagtgaaacaagcaaatgcagtggaggagagtatcagaaaaaaagcc
aagagttgtgagggctttccattctctgaggttatccaagagtttcttgtgaacaagaat
aaattgactaacataaaggaatgtcgaaggccaaatttattgtcctttcagctatttgct
tcagagaagatggaatggaccaaacattatgcttgtaagaagctgttagcacttttgaca
cgttatgatatgatccagagaaaatctggatacattgactcaaaacaactgcaggcaata
cggattgttaagacacgtattaaaaatggaattccttgttttgaaattgaatggcaaaaa
ccagaacattatgttgatccagaagatgagcctgtggagttgtttgttgtcacactagaa
gaagagtctttgtttcaggctgcttatcctgatgttgttgccctctatcaaatggaaaag
tcagaagttcttcagaagaaacagaaaaaaaagaaagacagaccagaagaaaagcactcc
atgtcagatacaaaagctcccccagaagatcagacacagcagagaagtacaggatcaaaa
gatgtagcattaccttcaacttcctgcacatcaacagttcatgtgtcagcatcagcagct
gctcttgctgactcatctgtgccctcacagtgcactaactattcagagatgtcatcctct
tcctctctaccagctggtctgcaactgagcactgctgatgggaaaggaacctccttcagc
acttcaccagcccatggaggtgccgaccatgatccagcagctgacttcaccacgtgcata
aaacactcacacccactaagtcatgaaacagtaagaaacagctcagaatattcagatgtt
acacagtctgatatgcattctggtagtgaagatgatttgttctcaaatgatgctatggca
caacttcaggagcggtctttaagcgagcgaatacttaagaaggctcccatttcatcacag
cctttttctgaaagtttagtgcagctgaagtctttgaattgttttaaacaatcaaaagaa
acattgaatcctgatagaaatcatgtctcttcctcatgtcagttaaataacctagtgcag
gaaagtaaaaatgttctatcacaaaactccgcaactgaatccagcgtacgtatctatcaa
gatgcatacaaaaaagctgacatcctggctgaaatggtgaaaaaaaacccctatataagt
ggggcagcatgtctagccttcagtgggcaaacaacagagactcttcttcctggatgtgaa
atgcttccagcatctcaaaagccagcaggtgcaaccggctgtcacgttaaagcagcttgt
attgaaactacttggaaagcttctcttaaaaagagtgtctgtcagaacagatgctcttct
agtgaagacagtgatgatgggcacgtggataaaatcctggtttatgaccagcagaaaagg
caactgaaccctggccagtttaaaaaatcttttacaaagaaaaggagcagtgttgttact
agtaaaaggacaaacagtgattcagcccttataattaaagggaagaagaaaagtactaat
ttaaaggaagctgctaatagtttctcagtgcaggtatctctaaaaccatcctctgtagag
gaagttaattgttcccaaagtccagagcaaccaattgaaaaattgggttctcccacagag
caagacaaaagtgctgttctgacttctgcgtgggcagacagtccccttcccctgtctgaa
agactgaaaggaagaatcaaaatcaattag
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