Ficedula albicollis (collared flycatcher): 101818519
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Entry
101818519 CDS
T02815
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
fab04147
]
101818519 (COL18A1)
00535 Proteoglycans [BR:
fab00535
]
101818519 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101818519 (COL18A1)
Exosome [BR:
fab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101818519 (COL18A1)
Proteoglycans [BR:
fab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101818519 (COL18A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101818519 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101818519
NCBI-ProteinID:
XP_005048978
LinkDB
All DBs
Position
7:complement(266396..288174)
Genome browser
AA seq
2305 aa
AA seq
DB search
MAPPRLGFLLLLACCFSCSEPQLLDWVWDSAKTTGSPAAPGKGIPASEPPTSAAAPAPSP
SPVRWGGEAAGNVTTPRRQEPDPATAAPVGEGTTEQWDRSATGLLESTARASIAPPHIMS
PAPGQQVASSPRNKPQLLGTGTPKDLQLLGSGTTEDPQLLGSGSTEDLQLLRMKTTKELQ
FLGSVSPTEHLGTGTTEDLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTT
EDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGT
TEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSG
TSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGS
GTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTADLGSVSPKELLG
TGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTTEDLQLLGMVSTA
DLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGTTEDLQLLGLGTT
EDLQLLGMVSTADLGSVSPKELLGTGTTENLQLLGSGTTENPQLLGSGTSKDLQLLGSGT
TEDLQLLVMERTKDPQLLRTTKDPQLLGQGTTENLQLVAMRSTEETQLPRTVTSERPELL
GNTENPQLVRMVTTENPEFLGTGTPTAIETQVSLQRPAGPQTGSAPFPFSPGDSTHERAV
PFQDPLAQPPHHLHGASPNLWHGTGHLRLALASRNGSQSPPWPDQRVDKGVDPPAAYSSV
PLDFDLLTATMQLYGSGGTGLSSFFPGLMPIAGRCQPIPTHLPVCSVLGTSHVRLPNYLR
HSSEEEIQAALHEWEGLLKSRCHRYLEWFLCLLLLPGCSPSVPVTPPPCQGFCEAVRDLC
WTHLAGGRLPLPCDALPEEDEGVSCVFINASAESLSAEVSLLELIGDPLTEEIHRIYGPD
NNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGV
KLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVILYLDCEEH
ERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDA
EVSGDFGSGMEGGQQPSGKVEAVPGLVDAVPVTSPPVAGGSGPRSGGGSPQQAERTRAEE
RLRVSTGDTSRKGEKGEKGERGLKGDSGTSGIIGPGSVKGQKGEKGDLGVKGSAGFGYPG
SKGQKGEPGDPGPPGTHSRHGDGLVVEQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGEM
GPPGFPGMPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPAPPSKNDKLTFIDMEGSGFGGD
LESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPQGPVGPQGP
PGRDGEAGQPGPKGEQGDVGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGPRGQ
PGPPGPPGPPGPGYEAGFSDMEGSGLPFTPGPPGPEGPQGVPGLPGVKGEVGSPGQPGLP
GPKGDAGMPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQII
TVSSEDKSLLAFPGPEGRPGHAGFPGPVGPKGDQGSTGLQGAPGLKGEKGEPGVIISPDG
TVVTAKVKGEKGEPGLRGPVGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVL
GSRGLPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFPGFHQFQGQKGEKGDTGPPGPPG
QFPYDASHFGASMRGDKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKGD
SIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPP
GISGMSLGLRAVPTYQAMLSAAHELPEGSLVFLTDRQELYVRLRGGFRRVLLEEQNLIPS
SALDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHH
QHELINGYYVQRRPDPAPVAAHVHQDFQPALHLVALNTPLSGSMRGIRGADFQCFQQARQ
VGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLQDEVLFNNWEALFTGSGAPLRAGTR
ILSFDGRDVLRDAGWPQKSVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLASGKLLE
QVASSCQHTFIVLCIENSFMTATKK
NT seq
6918 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttgggatttctgctcctcctggcttgctgcttctcctgctctgaa
ccacagctcctggactgggtttgggacagcgcgaagaccacaggaagcccagcagcaccc
ggcaagggaatcccggcgtcggagccgccaacctcggcagcagctccggctcccagcccg
tccccagtgaggtggggtggcgaggcggcagggaatgtcaccactccacggcggcaggag
ccagatcctgctacagcagcgcctgtgggtgagggaaccacggagcagtgggacaggagt
gccacagggctgctggagagcacggcacgggcaagcatcgctcctccccacatcatgtca
cctgctccaggtcagcaggtggccagcagccccaggaacaagccccagctcctggggaca
gggaccccgaaggacctacagctcctggggtcagggaccactgaggacccacagctcctg
gggtcagggagcaccgaggacctgcagctcctgaggatgaagaccaccaaagaactccag
ttcctgggatcagtgagccccacggagcacttggggacagggactactgaggatctgcag
ctgctggggtcagggaccactgagaacccacagctcctggggtcagggacctctaaggac
ctgcagcttctggggtcggggactactgaggacctgcagctcctggggttgggcaccact
gaggacctgcagctcctagggatggtgagtactgcagacctgggatcagtgagccccaag
gagctcttggggacagggactactgagaacctgcagctgctggggtcagggaccactgag
aacccacagctcctggggtcagggacctctaaggacctgcagcttctggggtcggggact
actgaggacctgcagctcctggggttgggcaccactgaggacctgcagctcctagggatg
gtgagtactgcagacctgggatcagtgagccccaaggagctcttggggacagggactact
gagaacctgcagctgctggggtcagggaccactgagaacccacagctcctggggtcaggg
acctctaaggacctgcagcttctggggtcggggactactgaggacctgcagctcctgggg
ttgggcaccactgaggacctgcagctcctagggatggtgagtactgcagacctgggatca
gtgagccccaaggagctcttggggacagggactactgagaacctgcagctgctggggtca
gggaccactgagaacccacagctcctggggtcagggacctctaaggacctgcagcttctg
gggtcggggactactgaggacctgcagctcctggggttgggcaccactgaggacctgcag
ctcctagggatggtgagtactgcagacctgggatcagtgagccccaaggagctcttgggg
acagggactactgagaacctgcagctgctggggtcagggaccactgagaacccacagctc
ctggggtcagggacctctaaggacctgcagcttctggggtcggggactactgaggacctg
cagctcctggggttgggcaccactgaggacctgcagctcctagggatggtgagtactgca
gacctgggatcagtgagccccaaggagctcttggggacagggactactgagaacctgcag
ctgctggggtcagggaccactgagaacccacagctcctggggtcagggacctctaaggac
ctgcagcttctggggtcggggactactgaggacctgcagctcctggggttgggcaccact
gaggacctgcagctcctagggatggtgagtactgcagacctgggatcagtgagccccaag
gagctcttggggacagggactactgagaacctgcagctgctggggtcagggaccactgag
aacccacagctcctggggtcagggacctctaaggacctgcagcttctggggtcggggact
actgaggacctgcagctcctggtaatggagcgcaccaaggacccacagctcctaaggacc
accaaggacccacagctcctgggccaggggaccactgagaatctgcagctcgtggcgatg
aggagcactgaggagactcagctgccaagaacagtgaccagcgagagaccagagctcctg
ggcaacactgagaacccacagcttgtgaggatggtgaccaccgagaacccagagttcctg
gggacaggaactcctacagcaattgagacacaggtgtccttgcagagaccagcgggtccc
cagacaggtagtgccccttttcctttctcaccaggtgacagtacccatgagcgggcggtg
ccattccaggaccccttggcacaacctccccaccacctccatggagcatcaccgaaccta
tggcatggcaccggccacttgaggctggctctggccagcaggaacgggagccagagcccc
ccttggcctgaccagagggtggataagggtgtggatcctcctgctgcttattcctccgtc
cctctggacttcgacttattaaccgctaccatgcagctctacgggagcggtggcacgggg
ctctcatccttctttccaggactgatgccaatagctggccgttgccagcccatcccaacc
cacctgcccgtctgcagcgtgctgggcaccagccatgtccgattgccaaattacctccgg
cacagcagcgaggaggaaattcaggcggctttgcatgagtgggaggggctgcttaagtcg
cggtgccatcgctacctggagtggttcctctgcttgctgctgctccctggctgtagcccc
tcggtccctgtaacccccccaccgtgccagggcttctgcgaggccgtcagagacctgtgt
tggactcacttggctggcgggcgcctgcctctgccctgcgatgctctccctgaggaggat
gaaggggtttcttgtgtctttattaatgcttctgcagagagcctgagtgctgaggtcagc
ctgctggagctgatcggggacccactgacggaggagatccacagaatttatggccccgac
aacaaccctggctacgtcttcggtcccaatgccaacacgggccaggtggcccggtaccac
ctgccgagccctttctaccgggacttctcgctgctgttccacatccagcccaccacgccc
cgggccggtgtgctctttgccgtcacggactcatcgcagagcatcatctacgtgggcgtc
aagctctcggagctgcgggcgggccagcagcagatcatcttctactacacagagcccggc
tcgcccagctcctacccggccgccaccttcactgtgcccaccctgctcaaccagtggacg
cgcttcgccatcagcgtggaggaggaggaagttatcctctacctggactgtgaggagcac
gagcgtgtccgctttgagcgctccccggatgagatggagctggaagaaggctccgggctc
tttgttgctcaggctggaggggctgacccggataaataccagggggtgattgcagatttg
aagctccgaggggacccgcgggcggccgagcgccagtgtgaggaagaggaggatgatgca
gaggtctccggggattttggcagcgggatggaaggtggacagcaaccgtccggcaaggtt
gaggctgtcccagggctggtggatgctgtccccgtgacctccccccccgtggcggggggc
agtggcccgaggagtggcggggggtccccacagcaggctgagaggaccagagcggaggag
aggctgcgggtctccacgggagacaccagccggaaaggcgaaaagggggagaagggagaa
cgtggcttgaaaggggactcggggaccagtggcatcatagggccaggcagtgtcaagggt
caaaagggcgagaaaggagacctgggtgtcaagggcagtgctggatttggctaccctggc
tctaagggccaaaaaggagaaccaggtgaccctggaccccctgggacgcactctcggcac
ggtgatggcttggtggtggagcaggtcactggccccccagggccaccagggaaggacgga
gcccctggcagggatggagagcctggagatcctggcgaggacggcaaacccggtgaaatg
gggcccccggggttccctgggatgccgggggagccgggtctgaagggggagaagggtgac
ccaggtgtggggccgaggggaccccctggaccacctggccctccaggaccaccggcaccc
ccctccaagaatgacaagctgaccttcatcgacatggagggctctggctttggtggtgac
ctggagagcctgcggggtccacgagggccacctggtcccccagggccacctggcgtgccc
ggtttgccaggagagccaggacggtttgggatgaaccgcacagacctgccaggaccaccg
gggctgccgggcagggatgggatccctgggccccaggggccagtgggtcctcagggtcct
ccaggaagagacggggaggctgggcagccaggccccaaaggagagcagggcgatgtgggt
gaccttggcctccctggcctgccgggacccaagggcagcaaaggagaaacaggaccagca
ggaccccctggagaaatgggcttagctggccttcccgggcccattggaccccgagggcag
ccagggccccccggccccccgggaccaccagggccaggctacgaggctggatttagtgac
atggagggctcggggctgccattcactcctggaccacctggacctgaaggaccacagggt
gtgccgggactgccgggggtgaagggagaggttggcagccccggacagcctggcttgccg
ggaccaaagggagatgctggcatgcctggtgtggatggccgccctggcctggagggcttc
cctggaccacagggacccaaaggtgacaaaggcagcaccggtgagaagggagagcgaggc
caagatggagtggggctgcctggcccccctggcccacctggtccccctggacagatcatc
actgtgtccagtgaagataagtccttgttggcttttcctggtccagagggcagaccaggc
cacgctggcttcccgggtccggtgggaccgaaaggagaccagggatcaactggtctccag
ggtgccccagggttgaagggggagaagggggagcccggcgtcatcatcagccctgatggg
accgtggtcactgccaaggtgaaaggagaaaagggggagccggggctgcggggcccagtg
ggaccatcgggtcccccaggacgagcagggatgaagggagagatcggctttccgggcaga
cccggacgtcccggcatgaatgggctgaagggcgagaagggtgaccccgcagatgtgctg
ggctcacggggtcttccaggccccccaggaccccctgggccccctggaccccctggcagc
atagtctacaacaatggcaataccttcagcgactccagccatccagcattccctggtttc
caccagttccaaggacaaaagggagagaaaggtgacactggacccccaggacccccagga
cagttcccctacgacgcaagtcacttcggtgccagcatgcggggtgacaagggggatgca
ggtcccaagggtgagaagggtgagccaggcagcaccccactctacagtcctggagtctct
ggccttccaggtcctccagggccccagggataccccggactgccaggtcccaagggggac
agcattgttgggccaccggggcctccaggacctcagggtcctcctgggatcggatatgag
gggcggcagggcccccctggccctcctggtccgcctgggccaccctccttcccaggtccc
cacagacaagctgtcagcatccctggacccccgggaccaccaggacctcccggaccacca
ggcatcagtgggatgtccttggggctccgggccgtgcccacgtaccaggcaatgctgagc
gccgcgcacgagctgcctgagggtagcctcgtcttcctgaccgaccggcaggagctctac
gtccgcctgcgcgggggcttccgcagggtgctgctggaggagcagaacctgatccccagt
tcggctctggacaatgaggtttacgacaagcctcccaccctccactacgccggcccccag
ccccgtgggcccctgcacccgctccgcaaccacgtccccccggccactgcccgtccctgg
cgtggggacgaggtggtggccaaccagcaccgcctgcccgagcagcccctgctccaccac
cagcatgagctcatcaatggctactacgtccagcgcaggccagaccctgcccctgtggcc
gcccacgtgcaccaggacttccagcctgcccttcacctggtggccctgaacaccccgctg
agcggcagcatgcgtggcatccggggagccgatttccagtgcttccagcaagcccggcag
gtcgggctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggatctctacagc
atcgtgcgcagggccgaccgtgctgccgttcccatcgtcaacctccaggatgaagtgctc
ttcaataactgggaagcccttttcacgggtagcggggccccgctgcgagccggcacccgc
atcctctccttcgatggccgggatgtcctacgggatgcgggatggccgcagaagagtgtc
tggcatggctcggatgccaagggccggcgcctgcccgagagctactgcgagacatggcgg
acagaggagcgcgcggtcaccgggcaggcttcctccctggcctctggaaaactcctggag
caggtggccagcagctgccagcacaccttcattgtcctctgcattgagaacagcttcatg
accgccaccaaaaagtga
DBGET
integrated database retrieval system
