Ficedula albicollis (collared flycatcher): 101818579
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Entry
101818579 CDS
T02815
Symbol
MSH2
Name
(RefSeq) mutS homolog 2
KO
K08735
DNA mismatch repair protein MSH2
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101818579 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101818579 (MSH2)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101818579 (MSH2)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
101818579
NCBI-ProteinID:
XP_016152435
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Position
3:complement(14603469..14649322)
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AA seq
879 aa
AA seq
DB search
MSDIYXSSFIYLFLLVGTPKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKE
NDWYLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLS
VCEFPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILVTDRKKADFTT
KDIVQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTF
DLSQYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKT
RIEERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQL
PNVVQALEKHEGAHQMLLLAVFITPLTDICSDFSKFLEMIETTLDMEKVENHEFLVKASF
DPNLTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALR
NNSKYGIIDTQKNGVKFTNSKLSAINDEYIRNREEYEEAQDAIVKEIINIASGYAEPIQT
MNDVIAQLDAVVSFAHVSNGAPVPYVRPVVLEKGQGRIVLRGARHPCIEVQDEVAFIPND
VTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGA
GDSQLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKI
CGFAMFATHFHELTALAEQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELA
AFPKHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALP
LADMSEEDIKVKLKQLRNDVLAKNNSFVNEIISRTKVTS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatatctactaatcttcttttatttatttatttttgttggtaggaacgccgaag
cttgagagtgtcgtgcttagcaaaatgaactttgaatcttttgtgagggacctgcttctg
gttcgtcattacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaa
aatgactggtatttggcttacaagggttctccaggaaatcttgcccagtttgaggaagtt
ctctttgccaacaatgatatgtccacagccatcggggttgtgggggttaagctgtctgct
gctgatggacagagagtagtaggagtgggctatgtcgacactacactgaggaaattgagt
gtttgtgagttcccagataatgatcagttctcaaatcttgaagctctactggttcaactg
ggcccaaaggagtgtgtgctgccaggaggagagactgcaggagagatgggaaaactgaga
caagtcattcagaggggaggaatcctggttacagacaggaagaaggcagatttcacaaca
aaagatattgttcaggatctcaatcgcttgttgaaatcaaaaaaagaagagcagctgaat
agtgcagcactgccagagatggaaaagcaggttgctgtttcgtctttgtcagccgttatc
aagtttttggagctgctgtcagacgagtctaattttggacaatttgaactgactactttt
gatcttagtcaatacatggttctagacaatgcagctgttcaagctctcaacctttttcag
agttctgtggaaaatgcaaatactgcacagtctctagctggtttactgaataaatgcaga
acccctcaaggacaaagactagttaatcagtggatcaaacaaccacttatggacaagacc
agaattgaggaaaggttgaatttggttgaagcttttgtaatggatccagagctccgccag
tgccttcaagaagatttgttacgtcgctttcccgacctcaaccggctggcaaagaaattt
cagagacaagctgcgaacttacaagactgttaccgaatgtaccaggcgatcaatcaactg
cctaatgttgtacaagcactagaaaagcatgaaggagctcaccagatgttgttgttggct
gtatttataacacctcttactgatatctgctctgacttctcaaagtttttggagatgata
gaaacaacattggacatggaaaaggtggagaatcatgaatttcttgtcaaggcttctttt
gatccaaatttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtcc
ttactaaagactgcagccaaagaactaggtctggaagctggcaaaagtatcaaactggag
acaaattcacagtttggacatcactttagggtaacttgtaaggaggaaaaagctctccgt
aacaattcaaaatatggaatcattgatacacagaagaatggtgtgaagtttactaacagc
aaactgagcgccatcaatgatgaatatataaggaacagggaagagtatgaagaggctcag
gatgcaattgttaaggaaatcattaacattgcttcaggttatgcagagcccatacagacc
atgaatgatgtgatagctcagctggatgccgttgtcagctttgcccacgtgtcaaacgga
gcgccggtgccttacgtccggcctgtcgttctggagaagggacaaggcaggattgtcctg
agaggtgccaggcatccctgcatcgaagtgcaggatgaggtggccttcatccccaatgac
gttacatttgagaagggcaagcagatgttccacattattactggccctaacatgggggga
aagtcaacgtacatccgacagacaggagtgattgttcttatggcccaaattgggtgtttt
gtgccgtgtgagtctgcagaaataaccattgtggattgtatcctggctcgggtgggagca
ggagacagccagctgaaaggagtgtctacgttcatggctgaaatgctggaaactgcttca
atccttaggacagcaactgaaaactccctgataatcattgatgagctgggaagaggaact
tctacttatgatggctttggcttagcttgggctatctcagaatacattgccagcaaaatc
tgtgggtttgccatgtttgctacacacttccatgaactcacagctcttgctgaacaagtg
ccaacagtaaataacctccatgtcactgctctgaccagcgatgacacgctgacgatgctt
tatcgtgtcaaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggca
gctttcccaaaacatgtgatagaaagtgcaagagagaaagctttggagctggaagagttt
caaaacattggcaagtccaaggaatctgaaggagaaccaccagccaagaaattatacaga
gaaagagaggaaggtgaaaagatcattcaggattttctttgtcaagtgaaagcattgccc
ctggcagatatgtcagaagaagacatcaaagtcaagttgaagcagctgagaaatgatgtt
ctggcaaagaacaacagttttgtgaatgaaataatttctcgaacgaaagttacatcgtga
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