Ficedula albicollis (collared flycatcher): 101818644
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Entry
101818644 CDS
T02815
Symbol
AFDN, MLLT4
Name
(RefSeq) afadin, adherens junction formation factor
KO
K05702
afadin
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04517
IgSF CAM signaling
fab04520
Adherens junction
fab04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101818644 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
101818644 (AFDN)
04530 Tight junction
101818644 (AFDN)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_3
RA_2
PDZ_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
101818644
NCBI-ProteinID:
XP_005043423
LinkDB
All DBs
Position
3:40347074..40432724
Genome browser
AA seq
1880 aa
AA seq
DB search
MRFYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEE
RRLDVDEKPLVVQLNWNKDDREGRFVLKNENDTVPPKKAQSNGPEKQEKEGVIQNFKRTL
SKKEKKEKKRREKEALRQASDKDDRLLHGDDIENFRLAAEVYKDMPETSFTRTISNPEVV
MKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEA
LEKYGLEKENPKDYCIACVMLPPGAQHSDDKGAKETILDDDECPLQIFREWPSDKGILVF
QLKRRPPDYVPKKTRKITDGKPLKGKERIDGSGYGSCLPPEKLPYLVELSPGRRNHFAYY
NYHAYEDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTV
TPRSIDAETYVEGQRISETTMLQSGMKVQFGSSHVFKFVDPTQDHIISKRSTDASLMVKG
PRHKTGAVQETTFDLEGDIHSGTALPASKSTSRLDGDRTSSASSTAERGMVKPMIRIDQQ
DYRRQDSRSQDTHGPELILPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTC
RYVLSSQYRPDITPAERTHKVIAIVNKMVNMMEGVIQEVDQVDQKQKNIAGALAFWMANA
SELLNFIKQDRDLSRITVDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENNPQ
RPKIDDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTAPDSGLCSHYW
GAIVRQQLGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSHADVPNINSTCFKLNS
LQLQALLQNYHCAPDEPLIPTELIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLL
PEDGYSCDVVRNVPSGLQEFLDPLCQRGFCRLTPHPRSPGTWTIYFEGADYESHLSHENA
ELAQPLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAG
DQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSD
RRGSGKPRPKSEGFELYNNSTQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPN
VANQPPSPGGKNAYASGTTTKITSVSTGNLCTEEQILPPRPEAYPIPTQTYTREYFTFPA
SKSQDRMGPAQGQWPNYEEKPQLQAESNHSINTTMQRVARSQEELRDKAFQPERNRLEVV
IRKDVEYIDRKSDSDQWMNSSVDSSTSSQEHLNHSSKPVSPGSCLTKSGPGRWKTPATSQ
PTPVAISQPIRTDLPPPPPPPPVHYAAEFDELQMDLPLPPPPPPNQIGAQASSQVAAAER
KKREEHQRWYEKEKARLEEERERKRREQERKLGQMRSQPLIPAQPVVPPVPLQQVKSEKP
STLQRPQETVIRELQPQQQPRTIERRDLQYITISKEELSSGDSLSPDPWKRDAKEKLEKQ
QQMHIVDMLSKEIQELQNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDE
VDTMLIMQRLEAERRARQTAVPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERR
QQEEERTRREAEEKRRQEEEYYSRLEAERRRQHDEAERRLLEPDEPGLYRPPLPREYELP
SPTPSSNAPPPPPQRNTSYLKTQVLSPDTIYTAKFVAYNDDDEEEEDSNLAGQDKYSSTR
KSYGDFPPATLKPQQPSRQPRPVSDGIFLSNSFQSSPVNANSTTVKKSQPMPPSNKPSFI
HASSSKGINSYTGSTGAAAGEVYRDPRDKRSKSQDADLPGAPENLTFRERQRLFSQGQDV
SNKVKASRKLMELENELNTK
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgagattctattttcaagacaaagcagctggaaattttgcaacaaaatgtatccgtgtc
tctagtactgccacaactcaagatgtgatagaaactcttgcagagaagtttcgaccagac
atgcgaatgttgtcatcccctaaatactcactttatgaagttcatgttagtggagaagaa
agaagattagatgtggatgagaagcctcttgttgttcagttaaactggaacaaagatgat
cgcgagggaaggtttgtcctcaagaatgaaaatgatacagttcctccaaagaaagctcag
agtaatgggcctgaaaaacaagaaaaagagggagtaattcagaatttcaaacgaactctc
tcaaaaaaagaaaaaaaagaaaaaaagaggcgtgaaaaagaggcattgcgacaagcgtca
gataaagatgataggcttcttcatggggatgacattgagaattttcgccttgcagccgag
gtttacaaagatatgcctgagaccagcttcactcgcacaatatccaatcctgaggtggtt
atgaaacggcggcgacagcaaaaactagagaagagaatgcaggaatttcgcagttctgat
ggcagaccagactcaggtggaacgctgagaatttatgcagacagtttaaaaccaaatata
ccgtacaagacaatcctgctgtccactacagatactgcagactttgcagttattgaagca
ctggaaaaatatggcctggaaaaagaaaatcccaaggattattgtattgcttgtgtcatg
ttgcctcctggtgctcagcactctgatgataaaggtgctaaagaaactattcttgatgat
gatgagtgtccactgcagatattcagggagtggcctagtgataagggaatactggtcttt
cagttgaaaaggcggcctcctgattatgtcccaaagaagaccaggaagataactgatgga
aagccattaaaggggaaggaaagaattgatggttctggctatggctcttgccttcctcct
gagaaactaccatacttggtagaattaagcccagggagaaggaatcactttgcctactac
aactatcacgcttacgaagatggctctgactccagggacaagccaaagctctatcgtcta
caattaagtgtcactgaagttggtactgaaaaatttgatgacaattccattcagttattt
ggtccaggaattcagcctcatcactgtgacctcactaatatggatggagttgttactgta
accccgagaagcattgatgctgaaacctatgtggaaggtcaacgtatttcagaaaccacc
atgctgcaaagtggaatgaaggttcagtttgggtcttctcatgtttttaagtttgtggat
cctactcaggaccatattatttccaaaagatctaccgatgcaagtcttatggtcaaaggt
ccaagacacaaaactggagctgtccaggaaaccacatttgatctggagggagatattcac
agtggaacagcattaccagcaagcaagagcaccagcaggctggacggtgacaggacatca
tctgcatccagcacagccgagcgaggaatggtgaagccgatgatcagaatagaccagcag
gattaccgcagacaggacagcagatctcaggatacccatggaccagaactgatactgcct
gccagtattgaattcagggaaagctctgaagatgccttcttatctgccattataaattac
acaaacagctcaacagttcattttaagctgtcaccaacgtatgttttgtatatgacatgt
cggtatgtattgtccagccaatacagacctgacatcactcctgctgagcgtactcacaaa
gtcattgcaatagtcaacaagatggtgaacatgatggaaggagtaatacaggaggtagac
caggttgatcagaaacaaaagaatattgctggggcccttgccttttggatggcaaatgca
tctgaactactcaatttcataaagcaagacagagatcttagtcgaattactgtggatgca
caagatgttttggcacacttggttcaaatggcattcaagtacctggttcattgtctgcag
tcagagcttaataactacatgccagcattccttgatgatccagaagaaaataatcctcag
aggcctaaaatagatgatgtgctgcataccttgactggagccatgtccctgttgcgacga
tgtagagtgaatgctgctctgacaatacagctcttctcccagctgtttcattttatcaac
atgtggctttttaacagattagttacagccccagattcagggttatgttcacattactgg
ggagctatcgttcgccagcaactcggccacattgaagcctgggcagaaaaacaaggttta
gaattggctgctgattgccacctgagcagaatagtacaggcaaccacattgcttaccatg
gacaaatactcacatgcagatgttccaaatattaatagtacttgctttaagctaaattct
ctgcagctacaagctttgttgcagaattatcactgtgctccagatgaaccacttattcca
acagaattgatagagaatgtagtaactgttgcagaaaatacagctgatgaacttgctcgc
agcgatggccgagaagtccagctggaagaggatcctgacttacagctaccttttctttta
ccagaagatggctattcctgtgatgttgtcagaaatgttccaagtggtttacaagaattt
ttagatccactttgtcaaagaggtttttgtagactaacacctcatccacggtcaccaggc
acgtggacaatatactttgaaggtgcagattatgaaagtcacctgtcccatgagaatgct
gagctggctcagcctttgagaaaagaacctgaaattatcactgtaacactaaaaaaacaa
aatggaatgggactgagcatcgttgctgccaagggtgctggtcaagacaaacttggaata
tacgtcaagtctgtagtgaaaggaggtgctgcagatgtggatggtcgtctggccgcaggg
gatcagttgcttagtgtggacggtcgaagtttggtgggcctgtcccaggagagggcagca
gaacttatgaccaggacaggttctgtagtaacactagaagtagcaaaacaaggagcaatt
taccatggtctggcaaccctgcttaatcagccatccccaatgatgcaaagagtttctgac
cgccgtggctcaggtaaaccccgaccaaagagtgaaggctttgagctgtataacaactcc
acgcaaaatggatcacctgagagtcctcagctgccatggacggagtacagtgaaccaaag
aagctgccaggggatgacagattgatgaagaacagagccgatcatcgttccagtcccaat
gtagcaaatcagcctccaagccctgggggaaagaatgcttacgcatctggaactaccacc
aaaataacctcagtctctactggaaatctttgtacagaggagcagattctgccaccacga
cctgaagcttatcccatcccaacacagacctatactagagaatatttcacgttcccagct
tcaaagtcccaggatcgaatgggtccagctcagggtcagtggccaaattatgaagaaaaa
ccacagctccaggcagaaagtaatcattctatcaatactaccatgcagcgtgtagctcgt
tcccaagaagagctcagagacaaagctttccagccagagcggaatcgcttggaagtcgtt
atacggaaagatgtggagtacattgatcggaagtcggacagcgatcagtggatgaattca
tctgtggattctagcacatctagccaggagcacctgaaccattcctccaaaccagtgtcg
cctggttcttgtttaactaaaagtggacctggccgttggaaaactccagccactagccag
ccaactccagtggccatttcccagcccatcagaacagatcttccccctccaccaccacct
cctccagtgcattatgctgccgaatttgatgaactacaaatggatttgcctctgcctccc
cctcctcctccaaatcagataggagcacaagcatcctcccaggtagctgctgctgagcgt
aaaaaaagagaagagcatcagaggtggtatgaaaaggaaaaggcacgtttggaagaagaa
cgagaaaggaaacgtcgtgagcaggagagaaaactgggccaaatgcgttcgcagccacta
attcctgctcagcctgtggttcctcccgtcccccttcagcaagtgaaatcagaaaaaccc
tcaactttgcagaggcctcaagaaacagttattcgagagctgcagccccaacagcagcca
cggactattgagcgaagagatctgcaatacattactattagcaaggaagaactgtcctct
ggtgatagcctgtctccagatccttggaaacgggatgcgaaggagaaactggagaagcag
caacagatgcacattgtggacatgctgagtaaagagattcaggaacttcagaacaagcct
gatcgtacagcagaagaaaacgaccgcctccgcaaactcatgcttgaatggcagttccaa
aagcgactgcaagaatcaaagcaaaaggatgaagatgatgacgaagaggaggatgatgag
gtggatactatgctcattatgcagcgactggaggcagaaagaagagcaaggcagactgct
gtgccagcaatctctgttctagatttgttacaggatgaagaacgcagacggcagcaacaa
ctggaagaaatgcggaaacgggaagcagaagacagggccaggcaggaagaagagcgccga
cagcaagaggaggagcggaccaggagagaggctgaagaaaagaggcgccaggaagaggag
tattacagtcgcttagaggctgaaaggcgcaggcagcacgatgaagctgaacgaagattg
ctggaacctgacgagcctggtctgtacagacctccacttccacgggaatatgaactccca
tccccaaccccttcatctaacgctcctcctcccccacctcagcgaaacacctcttacctc
aaaacacaggtcctctcccctgacacgatttatactgccaagtttgttgcatacaatgat
gatgatgaggaggaggaggattccaatctagcaggtcaggataagtactccagcacaaga
aaatcttatggtgactttcctcctgccacccttaaaccacagcagccctcccgccagcct
cgcccagtttcagatggcatctttctttccaactcattccagtcatctcctgtcaatgcc
aacagtactactgtcaaaaaaagccagcccatgcccccatcaaacaaaccaagtttcatc
catgccagcagctctaaaggaataaattcatacactggatctacaggagcagctgctggg
gaagtttatcgggatccaagagacaaaagatctaaaagtcaagatgcagatttacctgga
gcaccagaaaatttgacgttcagggaacgccagcgacttttttcacagggtcaggatgta
tctaataaagtaaaagcttctaggaaactaatggaactggaaaatgagctgaacacaaaa
taa
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