Ficedula albicollis (collared flycatcher): 101818692
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Entry
101818692 CDS
T02815
Symbol
LTN1
Name
(RefSeq) listerin E3 ubiquitin protein ligase 1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fab03009
]
101818692 (LTN1)
04121 Ubiquitin system [BR:
fab04121
]
101818692 (LTN1)
Enzymes [BR:
fab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101818692 (LTN1)
Ribosome biogenesis [BR:
fab03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
101818692 (LTN1)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101818692 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
101818692
NCBI-ProteinID:
XP_005038804
UniProt:
U3JUZ7
LinkDB
All DBs
Position
1:complement(104137375..104167316)
Genome browser
AA seq
1769 aa
AA seq
DB search
MGGKNKQRTKGSLRPSSSGRAAELLAKERGTVPGFIGFGTSQSDLGYVPAIQGAEEIDSL
VDADFRMVLRKLSKRDVTTKLKAMQEFGMMCKEREAEVVKGVLPYWPRIYCKISLDHDRR
VREATQQSFEQLILKVKKHLAPYLKSIMGYWLIAQCDTYSPAASAAKVAFEKAFPSSKQP
EALVFCKDEILNVLQDHLLKETADTLSDPQTVPEEEREAKFFRILTCSLLALKKLLSMLP
KKEMHSLEEKLMSLLSQNKFWKYSKNSVSQVRSAFFELISAFCQHLPEAVKAEAPRVCPA
VLLSIDDSDAVVCPALWEAVLYTITTVEDCWSHVNARKGVLPKLWTVLREGGRGLATVIY
PNLLPFISKVPPDVVEPKLEFFRVFFSSIIQGLSSERTIASPSESSAIITAFMECLCFAV
LQKREEEDQSQIHQMLICDQLIPFTNTVLKEPKLQSGPLFYQTAEMLSSWEAKAELSNDD
GTDEVFQKLLSDFWDHLLRMCMLHVDRLDADEKLLFAISGMLEILQNPKSATKPNNRKSL
KIRFTDEDESERNTESQKLTEVRNGDSEIQADLQQTSHLRKEPLENLVCNLAELSIVYVN
EQKSEQHLKFLSALLNSFSSNRVFQVLLEQGNDVSPAQAESQNEVKAHNQSPSVQFLYLN
LITWLKEDWRKDTHFLVDILYSVLHCCNNNEERKVILDDLAKMDLKWVIFLQIIQKACSS
TTKLSLVSDWLKGDTLGERLVMLADDLCHLGLKPRAASSGSASSERWTLLSLVLSQHVKS
ESLIGETFVERIIDKLQAALSKAKDLSEAGNTEPSVSFICDVASSFFSSVKGCLLMPSSE
DLLLTIFQLCAQRQDATHLTDVLVCKLKHTWMSGVNSLVHQLQSTQKQSTFLLKAALWVK
NQVQSSSLDVKSLQVLISAVSDLLLKLMEADGQSGYLVRAYVEHVTPNKTEWWKLHESLC
SEWMHKPLLEGRLSMNCEPLGSSVKLCGTTKLPGHLCTSALLSKMVLLQLKNTVVHGNDD
AERKKIDNIIAELLYSLQWIEELENPPYLLLEYLHMLEEMHITYEEFSALTSTASLQQTI
FDRSEEHGRLWSLTLAKVIHSENTASWERRELFKTTEGFLPLTEGRLHTLQCLSPFLIEE
EKRELVFHCVAKLMTCTQTELSSTDGAFGCLSILNSCMKDRSIDCDHLLPAILKIIISWK
NDNEDSFLFSCNLKEASAQLLGFNIEMMRYLPLLLKYSTAPLADNEWDFVMCSMLAWLET
TSESRLLYHVPLVQIFACVSCDLASALSAYFEAAAPDTTADLPKNLVSEWKEFFSEGIHN
LLLPLLVKITGETKNASEGSFQNSVLSSLGEALTYISKDQLLDHKLPPKFVAGQKTNLPD
NLQTLLNTLSPLLLFRARPVQVSVYHMLHKLMPELPKFDDEDLKSYGDEEEELALSPPAA
LMSVLATQELLLENILECIPVGEFAVIQPLSDEFCLVLGYLLTWKLTLAFFKAASSQLRV
LYSQYLRRTKSLNKLLYHLFRLMPENPVFSGPTSEVPNKDTKTFFTEELRLDVKGTGVLS
SQIPHLACSVYHITLKDLPAMVRLWWNSCEKRVFNVVDKFTSKYVSSVLSSQEISSVQTS
TQLFNGMTVKARSAAREVIATYSVDDIFIELIIQLPSNYPLGSITVESGKRVGVAVQQWR
NWMLQLSTYLTHQNGSIMEGLSLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTC
KKKFHSACLYKWFSSSNKSTCPLCRETFL
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atggggggcaagaacaagcagcgaaccaagggcagcctgcggccttctagcagtggccga
gctgcagagctccttgccaaagaacgtgggacagtgcctgggtttatcggctttggaaca
tctcagagcgatctgggatacgttcctgcaattcaaggagcagaggaaatagacagcctt
gtggatgctgatttccgaatggtgctgcggaaactttctaaaagggatgtcacaaccaag
ttaaaagctatgcaagagtttgggatgatgtgcaaggaaagagaagcagaagttgttaaa
ggtgttcttccttactggccaagaatttattgtaaaatttcactagatcatgatcgacgt
gttcgagaagcaactcagcaatcttttgagcaactgattcttaaagtaaaaaaacattta
gctccttacttaaaaagtatcatgggttactggctgattgctcagtgtgacacttactcc
cctgctgcttctgctgcaaaagtagcttttgaaaaagcttttccttcgagcaaacaacct
gaagccttagtattctgtaaggatgaaattcttaatgtacttcaagatcaccttctgaag
gaaacagctgatacactcagtgaccctcaaactgtaccagaagaagaaagggaagccaaa
tttttccggattctgacctgttccttgttagctttaaaaaagttgctcagcatgttgcca
aagaaagagatgcattcattggaggaaaagttaatgtcacttctatctcaaaacaaattt
tggaaatatagcaaaaacagcgtatcacaggttcgctcagctttctttgagctgatttct
gctttttgccagcacttgcctgaggcagtgaaagctgaagcaccaagagtttgtcctgct
gttcttctcagcattgatgacagtgatgcagtggtgtgtcctgctctttgggaagcagtg
ctttatactatcaccactgttgaggactgttggagtcatgtaaatgccagaaaaggagtt
ctgccaaagctgtggacagtgcttcgagaaggtgggcgaggattagctactgttatctac
ccaaacctcctgcccttcattagcaaggtgcctcctgacgttgtggaacccaagctggaa
ttcttcagagtttttttcagctctataattcaagggttgtcaagtgagaggacaatagcc
agcccttcagaaagttcagcaattataactgcatttatggagtgtctgtgctttgctgta
ctacagaaaagggaagaagaagaccaaagccaaattcatcaaatgcttatatgtgaccag
ctaattccttttaccaatactgtacttaaggagcccaagttacaaagtggaccattattt
tatcaaacagcagaaatgctgagttcctgggaagctaaagcagaactctccaatgatgat
ggtacagatgaagttttccagaaactgttgtcagatttttgggaccatcttttaagaatg
tgtatgcttcatgttgataggctggatgctgatgagaaattactgtttgccatatctggt
atgctagaaattcttcagaatccaaagagtgctacgaaaccaaacaataggaaatctcta
aagatcagatttacagatgaggatgaatctgaaaggaacacagagagtcaaaagctcacg
gaagtgagaaatggtgactctgaaattcaggctgacttgcagcaaacttcacatctaagg
aaagaacctctagagaacttagtctgcaacctggctgagctgagcattgtgtatgtcaat
gaacagaagtcagaacagcatttgaaattcctctctgccctgctcaactctttctcctca
aacagagttttccaagtacttttggagcagggaaatgatgtaagccccgctcaagctgaa
tctcaaaatgaagtgaaggctcataaccaaagtccatctgtacaatttctgtatctcaat
ttaataacttggctgaaagaagactggaggaaagacacccatttcctggttgatatttta
tacagtgtactgcattgttgcaacaataatgaagaaaggaaagtaattcttgatgattta
gcaaagatggatttgaaatgggttatatttctccagataattcaaaaggcatgctcaagc
acaacaaaactttccttagtctctgactggctgaaaggagacacacttggagaaaggctg
gtaatgctggcagatgatctgtgtcacctgggtttgaaacctagagcagcctcatcagga
tcagcctcttcagaaaggtggaccctcctgagcttggtgttgtcacagcatgttaaaagt
gaatcattgattggtgaaacttttgttgaaaggattattgataaacttcaagcagctctg
tctaaagcaaaggatctttctgaagctggaaatactgaaccatcagtatctttcatctgc
gatgtggcctcgagctttttcagctcagtgaaagggtgtttgctgatgccatcctcagaa
gacttgctccttaccatcttccagctgtgtgctcagaggcaggatgcaacacacttgaca
gatgtacttgtatgcaaattaaaacacacttggatgtctggtgtgaattcacttgtgcac
cagcttcagagcactcagaaacagagcacctttttgcttaaagctgcactttgggtcaag
aaccaagttcagtcttcctctttggatgttaaaagtcttcaggttttgatctctgcagtg
agtgatttgttgttgaagctcatggaagctgatggacagtctgggtatcttgtgagagct
tatgttgagcacgtcacaccaaacaaaaccgaatggtggaaattgcacgagtctctgtgc
tctgagtggatgcacaaacctcttttggaaggaaggcttagtatgaattgtgaacctctg
ggatcaagtgtcaagctgtgtggcacaactaaacttccaggccacctgtgtacttcagcc
ttattgagtaaaatggtcctacttcaactgaaaaatactgtagtccatggaaatgatgat
gctgaaagaaagaaaattgataatataattgcagaactgttgtactcattacaatggatt
gaagaattggagaatcctccttatctgcttctggagtatcttcatatgttagaagagatg
cacatcacatatgaggagttcagtgctctgactagtacagctagcctgcagcaaactata
tttgacagatcagaggaacatggaagactctggtccttaaccctggccaaagtgatccat
tctgagaacactgcatcctgggagaggagagaacttttcaagacaacagaagggttcctt
ccattaacagagggcagattgcatacacttcagtgtttatcacctttcttaattgaggaa
gaaaagagggaacttgtcttccattgtgtggccaaacttatgacatgtacacagacagag
ctctccagcactgatggagcatttggatgtctttccattttgaactcctgcatgaaggat
agaagtattgattgtgatcatctactacctgcaatactgaaaatcataatatcttggaaa
aatgataatgaggacagctttctgtttagctgcaatctgaaagaagcaagtgctcagttg
cttggtttcaacattgagatgatgcgttaccttcccttgctgctgaaatattccacagct
cctctggctgataacgagtgggactttgtgatgtgctccatgctggcttggttagagaca
acaagtgaaagccgtttgctttaccatgtcccgcttgtgcagatttttgcttgtgtcagt
tgtgacttggcatctgcccttagtgcttactttgaggctgcagctcctgacactactgca
gatcttcctaagaacttggtcagtgaatggaaagaattcttttctgagggaattcacaat
ttgctgttacctttgttggtgaaaatcacaggggaaaccaaaaatgcatcagaaggctct
tttcagaactctgtgttgtcatctttgggtgaagctctaacttacatctcgaaggaccag
ttgttagaccataagctgccaccgaagtttgttgcaggccagaagacaaatcttccagat
aatctccagaccctactgaacacactctctccattgctgcttttccgggctcgacctgta
caggtttctgtctaccatatgcttcataaattaatgcctgaattgcctaaatttgatgac
gaagatctcaagtcctatggtgatgaagaggaggaattggcattatcacctccagcagct
ctgatgtctgtcctggccactcaagagctcttgctggaaaacatcctggaatgcattcca
gttggagaatttgcagttattcaacccctgagtgatgagttctgccttgttctaggatat
cttctcacttggaagttaacattagctttctttaaagcagcttcttctcagctgcgagtt
ctctactcacaataccttagaagaactaaaagcttgaataaactgctttatcacttgttc
aggcttatgcctgaaaaccctgtcttttctgggccaacttcagaagttccaaataaggac
acaaaaaccttctttactgaagagcttcgtttagatgtcaaaggaacaggggtgctgtca
tcccagatcccacacttggcctgctctgtgtaccatataacactgaaagatctgccagcc
atggtgaggctgtggtggaatagctgtgagaagcgtgtcttcaatgttgtggataaattc
acaagcaaatatgtcagcagtgtgctctcctctcaggaaatatcttctgtccagactagc
acacagttatttaatggcatgacagtaaaagctcgatctgcagcacgagaagtcattgca
acctattctgttgatgatatctttattgaactaataatccagcttccatcaaattatcca
ctgggatccataacagttgagagtggaaagagggttggtgtggctgtccagcagtggcgc
aactggatgctgcagttaagcacataccttacacatcagaatggaagtattatggaaggc
ttatctttgtggaaaaataatgtggataaacgttttgaaggcgttgaagattgcatgatc
tgtttttcagtcattcatggttcaaactattctcttcccaaaaaagcttgcagaacatgc
aagaagaagtttcattcagcttgcttgtacaaatggttctcatccagcaacaaatccaca
tgtccactgtgtagagagacattcttgtga
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integrated database retrieval system
