Ficedula albicollis (collared flycatcher): 101818910
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Entry
101818910 CDS
T02815
Symbol
DDX21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fab03009
]
101818910 (DDX21)
03036 Chromosome and associated proteins [BR:
fab03036
]
101818910 (DDX21)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101818910 (DDX21)
Ribosome biogenesis [BR:
fab03009
]
Eukaryotic type
Pre-60S particles
Helicases
101818910 (DDX21)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101818910 (DDX21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101818910
NCBI-ProteinID:
XP_005048019
LinkDB
All DBs
Position
6:1369858..1379753
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AA seq
660 aa
AA seq
DB search
GKKVKRQVKAKRRGKAEAEEAQPEEDGLGDGDLEPPVPKKTKKAKEKSNGLAGESEASQH
AVKSSPAAGGSVTAPAVQSGEQDSDAEELTEEEKEGAFSNFPLSENTIKLLTARGVKYLF
PVQVRTFQPIYDGKDVIAQARTGTGKTLSFALPLIEKLQSVSQDGRRGRAPKVLVLVPTR
ELAIQVAKDFKNFTKKLSIACFYGGASYKEQLDLLKSGIDILVGTPGRIKDHIQNSKLEL
SNVKHVVLDEVDHMLDMGFAEQVEEILGSSYKKGSENNPQTLLFSATCPRWVYDVAKKYM
RDEYEQIDLIGKKTQRTATTVEHLAIQCRSSQRAGVLGDIIQVYSGSHGRTIVFCETKRE
ANELAMNASLKQDAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVI
QCSPPKDVDSYIHRSGRTGRAGRTGICICLFQRREEDLLKQVEHKAGITFKRVGVPSATD
VIKASSSDAKKLLEAVPPSAVDYFRKSAEELIDEKGAVAALAAALAHISGAAHIQQRSLL
NSTAGFVTMVLKCSIEMHTMGYAWRGLKEQLGEEIDNKVSGMRFLKGKMGVCFDIPVDEL
NNIQEQWRDTRRWQLSVASELPELEEFPQEAAGRGFSRFGKSRQGDFKRNSWFKNGNRGL
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
gggaagaaggtgaagcggcaggtgaaggcgaagcggcgcggtaaggccgaggccgaggag
gcgcagcccgaggaggacgggctgggggatggcgacttggagccccccgtgcccaagaag
acgaaaaaagccaaggagaagagcaatggtttggcgggagagagcgaggcgtcccagcac
gcggtgaaatcatcccccgctgcgggcggcagcgtgacagccccggctgtccagagcgga
gagcaggacagcgatgccgaggagctaacagaagaagaaaaagaaggcgccttctctaat
tttcctctctcagaaaacactatcaaacttctcacagctcgaggtgtaaaatacctgttc
cctgtgcaagtgaggactttccagcccatatatgatggcaaagacgtaattgctcaagct
cgaacaggaactgggaaaaccctttcctttgctcttccactgattgaaaaacttcagagt
gtctcacaggatgggagaagaggccgtgcaccaaaagtgctggttcttgttccaaccagg
gaattggccattcaggtagccaaagacttcaagaatttcacaaagaaactgtcaattgct
tgtttttatggaggagcttcatataaagaacagcttgatctccttaaaagtggcatcgat
attctggtgggaacccctggccggatcaaagaccacattcagaacagcaagctggagctt
tccaacgtgaagcatgttgtgttggatgaagtggatcatatgttagacatgggctttgct
gagcaagtggaagaaatcttgggatcctcctacaagaaaggctccgagaacaacccgcag
acactgctgttttctgcaacttgtccacgatgggtttatgatgtggcaaaaaaatacatg
agagatgagtatgaacagattgacctgattggcaagaagactcaaaggacagccacaact
gtggaacacttggccatccagtgtcgctcatctcagagggcaggagttcttggggacatc
attcaggtctacagtggcagccatgggcggaccattgtgttttgtgagaccaaaagggaa
gcaaatgagttggctatgaatgcttcactcaaacaggatgcccagtccttgcatggtgac
attccacagaagcagagagaaattacattaaaaggcttcagaaatggtgtttttgaagtg
ctgattgcaacaaatgtagctgcccgtggcttggatattcctgaggttgaccttgttata
cagtgctcaccaccaaaagatgttgactcctacatccaccgttcgggacgcacgggtcga
gctggccgcaccggcatctgcatttgtttgtttcagagaagagaagaagatcttctgaaa
caagtcgagcacaaagcgggtattacctttaagcgtgtaggcgttccctctgctacagat
gtaattaaagcttcaagtagtgatgccaaaaagttgctggaggccgttcctccctctgcg
gtagactacttcaggaaatcagctgaggagctgatagatgagaagggggcagtggctgcc
ctggctgcagccctggcacacatttctggggcagctcacatccagcagcgctccctgctc
aactcaacagctggctttgtgaccatggtgttgaagtgttcaatagagatgcacaccatg
ggctatgcctggcgggggctgaaggagcagcttggggaggaaatcgataacaaagtgtct
ggaatgcgtttcctcaaggggaagatgggcgtgtgctttgatatccctgttgatgaactg
aataatatacaggagcagtggagggacacgcggcgctggcagctgtcggtggccagcgag
ctgcccgagctggaggaattcccccaggaggcggcaggacgaggcttctccaggttcgga
aaaagcaggcaaggagacttcaagagaaacagctggttcaagaatggaaatcggggactt
taa
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