Ficedula albicollis (collared flycatcher): 101818990
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Entry
101818990 CDS
T02815
Symbol
VPS8
Name
(RefSeq) VPS8, CORVET complex subunit
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101818990 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101818990 (VPS8)
Membrane trafficking [BR:
fab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101818990 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
TPR_Vps41
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
101818990
NCBI-ProteinID:
XP_016156118
LinkDB
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Position
9:complement(6183536..6251865)
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AA seq
1390 aa
AA seq
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MAEAPEPAEPEPCPELPVHRLSVAELDRELDSRSELIDDKEFDIPQVDTPPTLESILNET
DDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRL
SLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLCLGSTAV
GAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDD
PTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVDLRDHPLTQY
SLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPMLAFCRGD
VVYFLLVKRDDSGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEEL
ETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGTKSVHVM
TLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLTGDTSKRKAVIADRMVEILLH
YTDRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRLDLLFNQIYDKMSENSVAKGIF
LECLEPYILSDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWE
NRLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLSAGKSLTDEQVVMGNKLLVYISCCLAG
RAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEGSVDEEVYPYVRTLLHFDTREFLNVLALT
FEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTL
FDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYER
QLRYDKIIGCYLRDPLRKEEVFNYIHNILSMPGYSAEEKQLVWQKALDHIAELLVLSPGK
AAELAAIHFNEQIESIISNLQDQFLLFQFLRSLLDPREGINQDLLHLPPCITEQFIELLC
QYSPGQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKL
LMLTQDDESSAEPSLLENIEDTLMKTIDLCQRNSHSLDQQQREALWFPLLEAMMSPQKSS
ASSQCSYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTF
NYEQTLLETTTSLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVF
SCGHLYHSLCLLSKECGVVTKGLMRWMCYKCSSSNKGGKLSENYSELKKGTAASLAQTSS
ESVLDPQQIQAFDQLCRLNRGTSRLALLTELARGDKHGPLSVSHGDPATSSVFQNENFQL
HLTPPPLAEE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcccccgagccggcggagcccgagccgtgcccggagctgcccgtgcaccgg
ctgagcgtggcggagctcgaccgtgagctggactctcgcagcgagctgattgatgacaaa
gaattcgacattcctcaagttgatacccctccaacgctggagagcatcctaaatgagact
gatgatgaagaagagtctttcattttggaggatccctttctcttgaacattgataacacg
gatacacactcctacgacacctcttctgtggccagctctgacagtggggacaggacacac
ctgaaaaggaagaaaaaactcccagattctctctcactccatggatcagtgatacggctc
tcactcctgaaaggaatttctgctcaaatagtgtctgcagcagacaaagtggatgctggc
ttgcccactgcaattgcagcatcaaatctgatagcagtggggacttcccatgggttagcc
ctgatatttggcaaagatcagaaccaggctctccggctgtgtctgggcagcaccgcagtt
ggggcccagtacggggccatctctgctctcagcatcaacaatgactgttccaggctgctc
tgtggctttgcaaaaggacagatcaccatgtgggatctggccagtgggaagctgctgcga
tcaataacagatgcccaccctccaggaacagccattttgcacatcaagtttacagatgat
cccacacttgcgatttgtaatgacagcggaggctccgtgtttgaactgtcatttaagaga
gttatgggagtgaggacgtgcgagtctcggtgtctcttcagtggctccaagggggaagtt
tgctgtattgagccattacatgcaaaggttgatttgagagaccatcctctcacccagtat
tcactgctggccatggcctccctcactaagatcctggttattggcctgaagccatctctg
aaagtgtggatgacctttccctatggccgtatggacccttcgagtgtccccctgctggca
tggcacttcgtggctgtgcagaactcggtgaaccccatgcttgccttctgtcgaggagat
gttgtgtacttccttctggtcaagagggatgatagtggtgcaatacatgtcacaaagcag
aggcagcttcatctgcactatgatctcatcaactttacttggatcaactcacggacagcg
gtgctgctggacagtgtggagaagctgcacgtcatagaccgtcagactcaggaggagctg
gagaccatcgagatctcagaggttcagctggtctacaacagcagccacttcaagtctctg
gccacagggggcaatgtcagcgaggccttggcactagttggagagaaagcttgttaccaa
tccatcagcagctgtggtggtcagatcttttaccttggaactaagtctgttcacgtcatg
acactgagaagctggagagagagagttgaccaccttctgaagcaagaacgtctcacagat
gctctggctcttgcttggtccttttatgaaggtaaagcaaaggctgttgtaggcttaact
ggggacacgagcaagaggaaagcagtcattgctgacagaatggttgaaatccttctccat
tacaccgatcggactctgaagaaatgtcctgaccaaggaaaaatccaggtgatggagcag
cactttcaggatgtggtgcctgtcatcgtggattactgtctcctgctgcaacgcctggat
ctattatttaaccagatatatgacaagatgagtgagaactctgtagccaaaggcatcttt
ctggagtgcttggaaccgtatatcttgagtgacaagctgatgggaatcacagctcaagtg
atgaaagacttactgcttcacttccaagacaagaacaggttggaaaacttggaagcctgc
attgtgcatatggatatcaccagtttagacatacagcaggtggttctcctgtgctgggaa
aaccgcctgtatgatgccatgatctacgtctacaacagtgggatgaacgacttcatcagt
cccatggagaagctgttcaaagtcattgctcctccactgagtgctggaaagtctctcaca
gatgagcaggtggtgatgggcaacaagctgcttgtgtatataagctgctgcttggcaggc
cgtgcatatccattgggtgatattcctgaagatctggtacctttggtgaaaaatcaggtg
tttgagttcctgatccggctgcactcagctgagggatctgtggatgaggaggtgtatccc
tacgttcggaccctgctgcactttgacacgcgggaattcctcaatgtgctggctctgact
tttgaagactttaagaatgataagcaagctgtggagtatcaacagagaattgtggacatt
cttctgaaagtcatggtagagaattcagacttcaccccatcacaggttggctgtctcttt
accttccttgcccggcagctcgccaagcccaacaacaccttgtttgtcaacaggacactg
tttgaccaggtgctggagttcctgtgcagcccggatgacgactctcggcattctgagagg
cagcaggtccttttagagctgctccaagcaggagggatcgtgcagtttgaagagagccgc
cttatccaaatggcagagaaggccgagttctatcagatttgtgagttcatgtatgaacgg
cagcttcgctatgacaaaatcattggctgttacctgcgggatcccctgaggaaggaagaa
gttttcaactacatccacaacatcctgtccatgcctggctacagtgctgaggagaagcag
ctggtgtggcagaaagctttggaccatatagcggagctgctggtgctgagcccaggtaaa
gcagctgagctggcagccattcacttcaacgagcagatcgagagcatcatctcaaacctg
caggaccagttcttgctcttccagttcctgaggagtctccttgatccgagagaaggaatt
aaccaagacctgctgcacctcccaccctgtatcactgagcagttcattgagctgctctgt
cagtacagcccaggccaggttttggagacactcaaagttctggaatactgcagactggag
gaaaccatccagataacccaaaaacatcagctccatgaggcttcttcatatttactagag
aagaagggagatatccatggtgcctttttggttatgcttgagcgattgcagagcaagttg
ctgatgcttactcaagatgatgaaagctcagctgaaccctccttgctagaaaatattgaa
gatactttaatgaaaacaattgatctttgccagaggaactcgcatagtttagaccagcaa
cagcgagaggccctctggtttcccctgcttgaggccatgatgtccccacagaaatcctct
gcttcatcacagtgttcatattctgaatctttgaagagtttgacaatgcaagtgctgaac
aacatggctgcatttattgctcttccctcaatcctgcagaggattctccaggatccagtt
tatggaaaagggaaacttggagaaattcaagggcttatcctgggaatgctggacactttt
aactatgaacaaactcttctagagacaaccacgagccttttaaaccacgatctccactgg
tccctgtgtaacctgagagcctctgtcaccagaggccttaccccaaagcaggactactgc
tgcatctgtctccagcagtacaaaaggaggcaggaaactgctgatgaaatcattgttttc
agctgtggccacttgtaccactcgctgtgcctgctgagtaaggagtgtggggtggtcacc
aagggcctcatgaggtggatgtgctacaaatgcagctcgagcaacaagggagggaagctg
agtgagaactactcagagctgaaaaaagggactgcagcatccctggcacagacaagttca
gagtctgtgttggatcctcagcaaatccaagcttttgaccagctctgccgactcaaccga
ggcacatcccgactggctctcctgacggagctggcgcgcggggacaagcacgggccgctc
agcgtttcccacggggacccggccaccagcagcgtcttccagaacgagaacttccagctg
cacctgacgccccctccgctggctgaagagtag
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integrated database retrieval system
