Ficedula albicollis (collared flycatcher): 101819232
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Entry
101819232 CDS
T02815
Symbol
PNN
Name
(RefSeq) pinin, desmosome associated protein
KO
K13114
pinin
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101819232 (PNN)
03015 mRNA surveillance pathway
101819232 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101819232 (PNN)
03041 Spliceosome [BR:
fab03041
]
101819232 (PNN)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101819232 (PNN)
Spliceosome [BR:
fab03041
]
Complex C
Other components
EJC/TREX
101819232 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
101819232
NCBI-ProteinID:
XP_005047373
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All DBs
Position
5:40006459..40016581
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AA seq
695 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPPQNRLLALTGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLE
VQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTRTK
PHLFYIPGRMCPATQKLMEESQKKMNALFESRRNEFAEQINKMEARPRRQSMKEKERQEV
QNEEKKEEQNKEQEEGKVAQQVEEMETGNQHNDVEMEEVGEEKGKTGSGSGHSDAEKEQE
EDEQKHDMEMKVEEPTEVRENDKQQDSQHEEVTVVKEESENIQPVDNEQDVAEMNEPDSV
EPVENENGKEIEPETECDAQPEKVCNVASPKKEKGIKTENKAELEETQEKTPETQTESVA
EGLSQPQSVPLAQSPQLSQSTQDTEPQTDKDENAAVSVKVVEAQAEQNQTPSAESKSKTR
SRSRGRAGNKTGHNRSSSSSSSSTSSSTTSASSSSTGSSTSRSSSTSSSTTSGSTSRDSS
SSSSSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGGSRDTKSSKDKS
SRSDRKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgcgcgctctgcaggagcagctggagaaagccaaagaaagcctcaag
cacgtggacgagaatatccgcaagctcacgggccgggaccccaatgatgtgcggccccct
caaaacaggctgttagccctcacaggccccggtggaggtagagggcgtgggagcttattg
ctaaggcgtggattctcggatagtggaggaggacccccagccaaacagagggatcttgaa
ggtgcatccagtaggctgggtggagaacgtcggacaagaagagaatcacgccaagaaagc
gacgcagaggatgatgatattaaaaagccagcgttgccatcttctgttgttgctacctcc
aaagagcgaacacgtcgagaccttatacaagatcaaaatatggatgagaaaggaaaacaa
aggaatcgacgtatatttggcttgttgatgggcactcttcaaaaatttaaacaagagtcc
acagtcgctattgctactgagaggcaaaagagacgacaagaaatcgaacaaaaacttgaa
gtgcaggcagaggaagagagaaagcaagttgaaaatgagaggcgagaactgtttgaagaa
agacgtgctaaacagacagagctgcggttattggagcaaaaagttgagcttgctcagttg
caagaagaatggaatgaacataatgctaagataattaaatacataagaacaaggacaaaa
ccccatttattctacatacctggcagaatgtgtcctgctacgcagaagctgatggaagag
tcacagaaaaagatgaatgcgctctttgaaagcaggagaaatgaatttgcagagcagatt
aacaaaatggaggccaggcccagaagacaatctatgaaggaaaaagaacgtcaggaggtg
cagaatgaagaaaagaaagaagaacagaacaaggagcaggaagagggtaaggtggctcag
caggtggaagagatggagacaggtaatcagcacaatgatgtagaaatggaggaggtaggg
gaggaaaagggaaaaacaggttcaggttcagggcatagtgatgcagaaaaagaacaggaa
gaggatgagcagaaacatgacatggagatgaaagtagaagagcctactgaggtgagggag
aatgacaagcagcaggatagtcagcatgaggaggtcacagttgtaaaagaggaaagtgaa
aacattcagcctgtggataatgagcaggatgtggctgaaatgaatgagccagatagtgta
gaacctgtagaaaatgaaaatggcaaagaaatagaaccagaaacagagtgtgatgctcag
ccagaaaaagtgtgtaatgtggcttctcccaagaaggagaaaggtatcaaaacagaaaat
aaagctgaacttgaagaaacacaggagaaaacacctgaaactcagacagaatctgtggct
gagggtctgtctcagccacagtctgtgccactagcacagtcacctcagttgtctcagtcc
actcaggatacagagccccagacagacaaggatgaaaatgctgcggtgtctgtaaaggtg
gttgaagcccaggcagagcagaatcagacaccaagtgcagaaagtaagagtaagactagg
agtagaagcaggggtagggcagggaacaagaccggtcataaccgcagcagcagcagtagt
agcagtagcacttcgagcagtactaccagtgcgagtagttccagtactggcagcagtacc
agtcggagcagttccaccagcagcagcactacgagtggcagtacgagcagggacagcagc
agcagtagctctagcagcagtgaaagtagaagtcgaagccgaggcagagggcataacaga
gatagaaaacgcagaaggagcacagacaggaagcgaagggatgcttcgggggtagataga
agccacaagtcctcaaaaggtggtggcagtagagataccaaaagctcaaaggataaaagt
tccaggtctgacagaaagagatctatatcagaaagtagtcggtcaggcaagagaacttca
cggagtgaaagagaccgtaaatcagacaggaaagacaaaaggcgttaa
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