Ficedula albicollis (collared flycatcher): 101819336
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Entry
101819336 CDS
T02815
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101819336
04518 Integrin signaling
101819336
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101819336
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101819336
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101819336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWC
VWC2L_2nd
BCCT
Motif
Other DBs
NCBI-GeneID:
101819336
NCBI-ProteinID:
XP_016161204
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Position
Un
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AA seq
532 aa
AA seq
DB search
PALSPRCPRAVPAAEAGSCLQDGHRYSDKDVWKPEPCQICVCDTGTVLCDEIICEEMRDC
PSPEIPFGECCPICPTEQPSGQPGPKGQKGEPGDIKDVMSIPVSTPVSTPIPVSIPGPMG
PRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGATC
HPRCHPRCHLCVTLCVTLCAILCVTRGVTRGVTLCAILCVTLCVTLCAILCVTRGVTRCA
TLCGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGVQGPRGESGTP
GSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPPGGQTVRDPR
ETPERPPRDPRGARGEPAPPPPRTLTTPRAVTTPTYPRVATPLMAQATPLHTFLLWGEPG
IAGFKGEQGPKGETAPRGAASPSRGGTVAGGTVGTVGQWPQCSVSPLGDAPPPWGHSPLA
SLTTINGALPSPAPAGTRGGHQGDSDLWDLSPGGVSQAAPGTPGPKAKSAPQ
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
cccgcgctgtccccacgctgtccccgcgctgtccccgcagccgaggctggcagctgcctg
caggacgggcaccgctacagcgacaaggacgtgtggaagccggagccgtgccagatctgc
gtgtgcgacacggggacggtgctgtgcgacgaaatcatctgcgaggagatgcgggactgc
cccagccccgagatccccttcggagaatgctgccccatttgccccaccgagcagcccagc
ggacagcccggccccaagggacagaaaggtgaacctggtgacatcaaagatgtgatgtcc
atcccagtgtccaccccagtgtccacccccatcccagtgtccatcccaggtccgatgggt
ccccgggggcctccgggacctcctggcaaacccggtgacgacggcgagacgggcaaaccc
gggaaatccggcgagcgcggcccccccggcccccagggcgcccgaggcttccccggcacc
cccggcctgcccggagtcaaaggccaccggggctaccccggcctggacggcgccacgtgt
cacccgcggtgtcacccgcggtgtcacctctgtgtcaccctctgtgtcaccctctgtgcc
atcctctgtgtcacccgcggtgtcacccgcggtgtcaccctctgtgccatcctctgtgtc
accctctgtgtcaccctctgtgccatcctctgcgtcacccgcggtgtcacccgctgtgcc
accctctgtggcgctcgtggcaatgacggcctccccggcccggccggaccccctggtccc
gtcggccccgcaggagcccccggcttccccggcgcccccggctccaagggtgaagcgggt
cccaccggagcgcgcggacccgagggtgtgcaggggccccgtggagaatccgggaccccc
ggctcgcccggccccgccggcgcccccgggaaccccggaaccgacggcatccccggagcg
aagggatcggcgggcgctcccggcatcgccggcgctccaggattccccggcccccgcggc
ccgcccggaccccagggagccaccggcccgccggggggacagacggtgagagacccccga
gagacccccgagagacccccgagagacccccgaggtgcccgcggggagccggccccgccc
ccgccccggacactgaccacaccacgcgcggtgaccacgcccacttacccgcgggtggcc
acgccccttatggcccaggccacgccccttcacaccttcctcctctggggcgagcccggc
atcgcgggattcaaaggcgagcagggacccaagggagagacggcccctcgaggggcagcg
tccccctcccgcggggggacggtggccggggggacggtggggacagtgggacaatggccg
cagtgttcggtgtccccccttggggacgctccccccccttggggacattcccccctcgcc
tcattaaccaccatcaatggggccctgccgagcccggcgccggcggggacacgaggggga
caccagggggactcggatttatgggatttgtccccggggggggtctcacaggccgccccg
gggacgccgggccccaaggcaaagtcggccccacagtga
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