Ficedula albicollis (collared flycatcher): 101819768
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Entry
101819768 CDS
T02815
Symbol
SETX
Name
(RefSeq) senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101819768 (SETX)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101819768 (SETX)
5.6.2.5 RNA 5'-3' helicase
101819768 (SETX)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101819768 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
DUF4164
SAS4
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101819768
NCBI-ProteinID:
XP_005055644
UniProt:
A0A803VMV6
LinkDB
All DBs
Position
17:complement(7699598..7732034)
Genome browser
AA seq
3064 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE
DLWDLETSRLVAHMEKSMNEETGEDELFLIDERGETPLSGFVGPNFENNVRVPLLEILKY
PYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYNY
NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDLRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERIQQCDKISEFFLLILVSIVELHRSKKCLHLLW
ISSQEWVEAVVRCATLPSRAFTRCSEKAPGLCAKGSAPGSFQAPSSVQHACVQLIRSLLK
EGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSIKGKSLSTSL
AGGSSSNSTALPTLSLKHERNVCDDGYKTSGHERRDLHSPFVMSKEGRDCQESLFQRRKN
AWEEECRDACRSSTSCTSTEGLLMNIKKEPDDLAAQEFIFPQNSLASKVCKKVQENRNSD
LAAGKCNMGNECFNSNMQHSDFRRGRELDMKYKAEPKTPPYLSAQTQVDSLSSGNCRSMQ
ETSASSVFQSRLMPTKEVCREDSSNSSRSEPGVPGKEDDSTLPSLKKASTEEKSGSLLVS
FFTRNTTVQTSNQEQPDLNHLDKYDCKNQFLETSCRDNISACGYFPFSSENKRDMIRPLS
VKCESSDRLFEFSEYFKRENSSVGKKEDDFVKTVSKDDVSSDSQIDRELSKLSLVAYTKS
VNFPVESMQESSVCHNVSDIKRKVKGAVRSSNEGQSTKCVSGAGGRSNQVIVISDSSDEE
KGVADKVWQTKTKNENLFAEESSTSSSISDSDTKRESRPPGSPLLLDDCDSQYFEFETEA
DVFSAWQDTQAYAVETTQECKQDHVSPAAETSNSGDCLNDNLNDWGYDLHYFSDDAAEEA
ASSIEKQTGDTSHQKEADDTKEATNSALEESVGKEDAKGQLEKCADKGTAKGFTPDLKLP
EPKASTSPISLASKLALKKNSTSPRKTTAKCKSALAVQRSPKKPPLVKTAKNKTPLQSTT
ERSQPGRLMPAVVPPRKVRQSPAPTSTVEKLGLKKGPRKAFDLSQPSLESLAQLRSHGKA
AGRIGVAQKRRTKQIEPQCLSVKRNKKLLVCQERQYLRQTRPKRSLKNSAGCSESRNKVT
KVCAKPVEQKPRSFELAAIKESVENQREKKREETACPSASERKLENFSVEEVASASEMPR
SSDWIRKWEGNSVVVPPVPMDSGLSSTALGDAKDESSGKGCTVLPECEMKTSKQNGCKSD
ESSDEGDDNLFLTQLDPVDMELCSQEESVQDAATGSKTPEEMDVDESLRQNEPSAVVKCK
DKDCMEQVEKPEEYCSKHAATSPGPDHVFAKPSLPPPKIRKPSTTKIFSAASSSRNAAFS
KDLEDGRKLPPPSKSKVNAAKAMVVRPPPHPKPAPAGNPPCRSPSFSNVPQPLSSSNVLQ
LQNKRYENASNISRGPGRETYSSFLGAQQRDYSIFVNQVLKWTYEMFANFSLFGTPDNLL
HSIVASVPVHFQGYNEYFNTFFPLMMLNAFETLAQEWIENQKVREKSYCFYLENFSADMN
TAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGEDSGMESHIVNHVGLVTRFSRAS
GYANRQKEQQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKGLLLLSRSPLAKP
IINPSYNDFCPRDLPVASGSAASYMNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPG
TGKSKTIVGLLSRVLRENTRNEKTARKKNSKIKPNRFLVCAPSNAAVDELMKKIIIAFKE
KCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKEA
LDQKLDMLSRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEARGHSQKVQADIILE
SDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGD
PKQLPPTVKSVKAQQYGYDQSLMARLQRHLEEQVQRNMLHSLPVVQLTVQYRMHPDICLF
PSNYVYGRTLKTAKSVEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPREVKLVMELI
RTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQGREKDCIIV
SCVRANSSEGSTLAHVQASSTKGSIGFLASLQRLNVTITRARFSLFILGRLQTLMEDKNW
NHLIQDAQKRGAIVRTTEKNYKKEALRILKLRPPGQPPAKGGMMTSPVVQAGSSSGKRSE
PGNSGNSPRELAAGPGHAVPQGSRGPTQPAGTPAADSNRGSAAASMGAPAADSRRGSAPA
SMGAPAADSRRGSAPASMGAPAADSRRGSAPASMGAPAADSRRGSAPASMGAPAADSRRG
SAPASMGAPAADSRRGSAPLCMGAPAADSNRGNAAASMGAPAADSRRGSAPASMGAPAAD
SNRGSAPASVGAAAVGSNRGSAAASMGTAAADSRRGSAPASMGAPAADSRRGSAPASMGA
PAADSRRGSAPASMGAPAADSRRGSAPASMGAPAADSRRGSAPPSMGAPAADSRRSSTPA
SVGAAAVGSNRGSAAASMGTAAADSRRGSAPPSMGAPAADSRRSSTPAFMAAPAADSRRG
SAPASTGAAAADSNRSSAPAPPGAAAADSRRSSAPAPSGAAALAAMPEKPRDPRLASLAS
RTEAKGKEQPLKDSPRSAQSNPGATAQQGLDVSSAARNQICRTENAKRAQQTAGQCNVLP
TAPHTAQREAERRAAVAKSGSRAPSEGGQSSEWNKDSRGLSRRPSQEAPENTDSGSAKRR
KIFP
NT seq
9195 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccggtggtgcacacagagtggtgctgacaccaccgagttcctgaagcac
tatgctgctcaaaggctgtcccaggaagattttgaaggatccaatgatgacctctgttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaaggttgcatgag
gacttgtgggacttggaaacctctcgcctcgttgcccacatggagaaatccatgaacgaa
gaaacaggagaggatgagttgtttctgattgatgagcgtggggagacacctctgtctggt
tttgtgggcccaaattttgagaacaacgtgcgggtacccctgctggaaatactgaaatac
ccttatctgctgctgcataagaaagtcagtgagctgtgtgtagaagtgctctgtagaatg
gaactaagtcatgactcctttcaagtctttgagaaatacccaggaatttatctctttttg
gtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttaggaaag
gttgacagggatgattactatgacttagaagaagtgctgacttgtttgttcaaagttatt
gagttggggctttttgagaatccagatatttacagctcttcaatgtttgaaaagggtaaa
ctcatccttctgccagctcacctgtatgacacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggccca
gacaaacaaaacgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgacccgttctggcctgccctgcactgtttcatggttattttggatcagctg
ggatctaaagtttggggtcagctgattgatcctgtacaagcctttcaaaccataatcaac
agtgtgagctacaacaatgaaatcaaaaatattcgcagcagcttcaggaggacaaaatct
gaaccagagtcagactacggtgacgacatgatttcttgcagtcagattgtgtataattat
aatacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc
cccaacatgtacgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga
gacctgcgtgttcatcacagcacattcctctggttcatcccttttgttcagtcccttatg
gatctcaaggacttgggtgtagcctatatagtagaagtcatccactacctctgctcagaa
atcaaagatatcctcatcgaaagaatccagcagtgcgacaaaatctctgagttcttcctc
ctcatcttggtgtccattgttgagctacacagaagtaagaagtgcctgcatttgctgtgg
atcagctcccaggagtgggtggaggcagtggtgaggtgtgccacgctccccagcagagcc
ttcactcggtgcagtgagaaggcaccggggctgtgtgccaagggctcggccccgggctct
ttccaggcgcccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagatcggccagcacgccctgtgcaagcagtacctggacaaactcaacctc
ctcctgcggggaaatcgagctgtgggctggcagctgagcagccaggaaacacaggagctg
caaacgtgtttaaagcaagttataagaagtataaagggtaaatcactgagcacctctttg
gctggaggaagcagttcaaactcaacagctttgccaactctctctctaaagcacgagagg
aatgtgtgtgatgatggatacaagacaagtgggcatgagaggagggaccttcattcacca
tttgtcatgtcgaaggaaggcagagattgtcaagagagccttttccaaaggagaaagaat
gcctgggaagaggaatgtagagatgcatgtaggagttcaacatcttgcacatccacagaa
ggcctcttgatgaatattaaaaaagagcctgatgacttggcagctcaggagtttatcttc
ccacagaactctttggcatcaaaagtatgtaagaaagttcaggaaaataggaactctgat
cttgcggcagggaaatgcaatatgggtaatgagtgcttcaattcgaacatgcagcattca
gatttcaggagaggcagagagttagacatgaaatacaaagcagaacccaaaacaccacca
tatctgtctgctcaaactcaggttgattctctatcttcagggaattgcagaagtatgcaa
gagacaagtgcaagcagtgtgttccagtctagactgatgcccactaaagaggtctgcagg
gaagattcctctaactcctctagaagtgaacctggtgtgccggggaaggaagatgacagt
actttgccttcactgaaaaaagcatcaacagaagaaaaatcgggttcattgttggtgtct
ttctttacaagaaacaccactgtgcaaacttcaaaccaggagcagcctgatttaaatcat
ctggataaatatgactgcaaaaatcaatttttggagacctcttgtagggataacatttcg
gcgtgtggttattttccatttagctcagaaaacaagagggatatgatcaggccactgtca
gtgaagtgtgaatcaagtgacaggttgtttgagttttcagaatatttcaagagggaaaac
agttcagtggggaaaaaagaggatgattttgtgaagaccgtttctaaagatgatgtttca
tcagactcccagattgatagagagctcagtaaattatctttagttgcttataccaaaagt
gtcaattttcctgttgaatccatgcaggaaagctcagtgtgccacaatgtgtctgatatt
aaaaggaaagtgaaaggtgctgtaagatcttccaacgagggccaaagtaccaaatgtgtc
agtggtgcaggtggccgtagcaatcaagtaattgtaatttcagactcttctgatgaagaa
aaaggtgtggctgacaaggtgtggcaaacaaaaaccaagaatgaaaatctgtttgcagag
gaatcttcaacttccagcagcatttctgatagtgacactaaaagagaatcacggcctcca
ggctctcccctgttgctggatgactgtgattctcagtactttgagtttgaaacagaagct
gacgttttttcagcttggcaagatactcaagcgtatgctgtggaaacaactcaggagtgt
aaacaagatcatgtttcaccagcagctgagacgagtaattcaggtgactgcctgaatgat
aacttaaatgactggggctatgacctgcattacttcagtgatgatgccgcagaagaagca
gccagctcaatagaaaagcagacaggagatacttctcatcagaaagaagctgatgataca
aaagaagcgactaattcggccttggaagaatcagttggcaaggaagatgcaaaaggtcag
ctggagaaatgtgcagacaaaggaactgctaaaggcttcaccccagatttaaaattgcct
gaacccaaagcatctacatctcccatctcattagcttcaaagttggccctcaagaaaaac
agcacaagcccacggaagaccacagcaaaatgtaaatcagcactggctgttcagagaagt
cctaaaaaacctccccttgttaaaacagccaaaaataaaacacccctccaaagcacgaca
gaacgttctcagcctggcaggttgatgcctgctgtggttcctcccaggaaggttcggcag
agtcctgctccaacatcaactgtggaaaagcttggcctgaagaagggcccccgcaaggca
ttcgacttgtcgcagccctcgctggagagcctggctcagctgcgcagccacggcaaagcc
gcgggcagaatcggagttgcgcagaaaaggagaaccaaacagatcgagcctcagtgtttg
tctgtaaaacgtaataaaaaactgctcgtctgccaagagcggcagtatctaaggcagaca
aggcccaaaagaagcctgaaaaattctgcaggatgttcggagagcagaaacaaagttacc
aaagtgtgtgcaaagcctgtggaacaaaagcctcgaagttttgaactggcagctattaaa
gaatctgttgaaaaccagagggagaaaaaaagagaagagactgcttgtccttctgccagt
gagagaaaacttgagaacttctctgtggaggaggtggcaagtgcctctgaaatgcctcgt
tcttcagactggatcagaaaatgggagggtaacagtgtggtggttcctcctgtccctatg
gattcaggactctcttccactgcacttggagatgctaaagatgagtcttcaggaaagggt
tgcactgtcctgcctgagtgtgagatgaaaacctcaaagcaaaatgggtgtaaatcagat
gaaagcagtgacgaaggtgatgacaatctgtttttaacccagttggatcctgtggatatg
gagttatgttctcaggaggaaagtgttcaagatgctgctacaggcagtaagaccccagag
gagatggatgttgatgaaagccttcggcagaacgagccctcagctgttgtgaagtgtaag
gacaaagactgtatggaacaggtggaaaaacctgaagaatactgcagtaaacacgcagcc
accagcccagggccagatcacgtgtttgccaagccttctctaccaccacctaaaataaga
aagccttccactaccaaaattttcagcgcagcaagttcttcacggaacgcagccttcagc
aaagatcttgaggatggcagaaagttgcccccaccttcaaaaagcaaagtgaacgcggcc
aaagccatggtggtcaggccaccaccacatccaaaacctgcaccagcaggaaatccaccg
tgcagatctccaagtttcagtaatgtacctcaaccccttagttccagtaatgttctccag
ttacaaaataaacgctatgagaatgcttcaaatatttccagggggcctggccgagaaacc
tactcctcttttcttggcgctcagcagcgcgattacagcatttttgttaaccaagtcctg
aagtggacttatgaaatgtttgcaaacttcagcctctttggaactccagataatcttctg
cattccatagtagcctctgttcctgtccattttcagggctacaacgaatattttaataca
ttttttcccttgatgatgctcaacgcctttgaaacactggcacaagaatggatagaaaac
cagaaagtaagagagaaaagttattgcttctacttagagaacttttctgctgacatgaat
acagcacattttacagctcatctacgagagagtgatttggcaaggcagcttcatccgaag
gaggatgacttaatccttttggtggtccacaaggagaaggacacttttggggaagacagt
gggatggagagccacatagtgaatcatgttggcctcgtgacacgattttctcgtgcatct
ggctacgcaaatagacaaaaagagcagcaaactgcctgtcatcttactgtgcaaacccga
ggcaatttgtcattcttcatccataagcaagtgaagtgtgtggtggttggctccctggtg
accacacacagaaagttcaaaggtctgctgttgctgagcaggagccccctggctaaaccc
atcataaatccaagttacaatgacttctgtcccagagatctgcctgttgcctcaggaagt
gctgcttcatatatgaatgaatacaatgaagatcaaaagagagccattgagacagcttat
gccatggtaaagcagcacccaggacttcccaagatctgccttatccatggaccacctggg
acagggaaatcaaaaaccattgtaggactcctgtcccgtgttctgagagaaaacactagg
aatgagaaaacagctcggaaaaaaaattccaagattaaaccaaaccgttttctagtttgt
gcaccatcaaatgctgctgttgatgaactcatgaaaaagatcatcattgcttttaaggaa
aaatgccaaaacaaacaggagcctttgggaaattgtggtgacatcaaattagtgcgactt
ggtgctgaaaaatcaatcaacagtgaagtccggggattcagcctggataagcaagttgaa
cacagaatgaaacgaaagccaggtgactgtgaccaggacattcagaagaagaaagaagct
ctggatcagaagctggacatgctctctcgagagcgtgccatgcacagatgtgagaagaga
gagagtcaaatgttaaatgatgaaattggcagacttgcaaaggagagacagcaactcgct
tctcagctaaaggaggctcgggggcactcccagaaagtgcaggcagacatcatcctggag
tctgacatcatctgctgcacgctgagcaccagcggggggagcctgctggagtcggcgttc
tcccggcaggggctcgatcccttcagctgtgtcatcgtggatgaggcagggcagtcctgt
gaggtggaaacactgattccactgatccatcgctgtaataaacttgtcctcgttggagat
cccaaacagctccctcctactgtcaaatcagtaaaagctcagcagtatggctatgaccag
tctttgatggcccgtctgcagaggcacctggaggagcaagtgcagaggaacatgctgcac
agcctgcctgtggtgcagctgaccgtgcagtacaggatgcacccagacatctgcctcttc
ccatccaactatgtttatggcaggactctaaaaactgccaagtcagtagaggagaacaga
tgttcttcagagtggccattccagccctacctgatttttgatgtagctgatggtcgtgag
gagcgagacaatgactcttacagcaatcctcgggaagtgaagctggtgatggagttaatt
agaacaattaaagaaaaaaggaaggatttgggtcttcgtcgcattggaataattacccct
tacagtgcacagaaaaagaaaatccaggaacaactggacagtgtgtttaaaaataatagc
ccaggagaagtggacacggtggatgcgttccagggccgggagaaggattgcatcatcgtg
tcctgtgtgcgggcaaacagctccgagggctccactctggcgcatgtgcaggcaagcagc
accaaaggatccattgggtttttggcgagcctccagcgactgaatgtcaccatcacccgc
gcccggttcagcctcttcatcctgggccggctgcagacgctcatggaagataaaaactgg
aatcacttaattcaggatgctcagaaaagaggtgccattgttaggacaacagaaaaaaat
tacaagaaagaggctctgaggattttgaagctcaggccaccaggacagcccccagccaaa
ggagggatgatgacatctcctgtggtgcaggctggttcttccagtggcaagaggagtgag
cctggaaattctgggaacagcccacgggaacttgctgctggccctggccatgcagtgccc
caaggaagccgagggcccacacagcctgcagggactccagctgcagattccaataggggc
agtgctgctgcatccatgggagctccagctgcagattccaggaggggaagtgcccctgca
tccatgggagctccagctgcagattccaggaggggaagtgcccctgcatccatgggagct
ccagctgcagattccaggaggggaagtgcccctgcatccatgggagctccagctgcagat
tccaggaggggaagtgcccctgcatccatgggagctccagctgcagattccaggagggga
agtgcccctgcatccatgggagctccagctgcagattccaggaggggaagtgctcctcta
tgtatgggggctccagctgcagattccaataggggcaatgctgctgcatccatgggagct
ccagctgcagattccaggaggggaagtgcccctgcatccatgggagctccagctgcagat
tccaacaggggcagtgctcctgcatccgtgggagctgcagctgtaggttccaatagaggc
agtgctgctgcatccatggggactgcagctgcagattccaggaggggaagtgcccctgca
tccatgggagctccagctgcagattccaggaggggaagtgcccctgcatccatgggagct
ccagctgcagattccaggaggggaagtgcccctgcatccatgggagctccagctgcagat
tccaggaggggaagtgcccctgcatccatgggagctccagctgcagattccaggagggga
agtgcccctccatctatgggggctccagctgcagattccaggaggagcagtactcctgca
tccgtgggagctgcagctgtaggttccaatagaggcagtgctgctgcatccatggggact
gcagctgcagattccaggaggggaagtgcccctccatctatgggggctccagctgcagat
tccaggaggagcagtactcctgcattcatggcagctccagctgcagattccaggagaggc
agtgctcctgcttccacgggagctgcagctgcagattccaataggagcagtgcccctgca
cccccaggggctgcagctgcagattccaggaggagcagtgcccctgcaccctcaggggct
gcagcacttgctgccatgcccgagaaaccacgggacccaaggctggcaagcctggccagt
cgaactgaagccaaaggcaaggagcagcccttgaaagacagccctcggtcagcccagagc
aacccaggagcaacagcacagcaaggcctggatgtgtcctcagctgccaggaatcagatc
tgcagaacagaaaatgccaagagggcccagcaaacagcaggacagtgcaatgtgcttccc
acagcccctcacacagctcagcgtgaggctgagcggagagcagctgtggccaaaagtggt
tccagagcccccagtgaaggaggtcagagtagtgagtggaacaaagactctcgtggttta
tcaaggagaccatcccaggaagcaccagagaacacagactcaggctctgccaagagaaga
aagatctttccctga
DBGET
integrated database retrieval system
