Ficedula albicollis (collared flycatcher): 101819867
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Entry
101819867 CDS
T02815
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101819867 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101819867 (CNOT10)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101819867 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
ARM_TT21_N
TPR_8
ARM_TT21
TPR_17
TPR_7
TPR_MalT
EMP24_GP25L
BLOC1_2
DUF6058
DUF948
Motif
Other DBs
NCBI-GeneID:
101819867
NCBI-ProteinID:
XP_005041178
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Position
2:43076280..43110996
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AA seq
759 aa
AA seq
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MAIKGHRNKRAKGQQSLEKQRADQGTEKHEGAGTSGITDQEKELSSSALQAFQAGNYDAC
LQHLNTLQDINKDDYKITLNTAVAEFCKSNQTTTDNLRQTLNQLKNQVHSVVEEMDGLDD
VENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYLLTYQAE
KALHLLAVLEKMISQGNNNSKNGKNESGNNTNKDSSNQKAESGALIEVAKSKIHQYKVRA
YIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSANIAEHPDFM
KTGECLRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDNACAQLGTGSSDPGKKFSGRP
MCTLLTNKRYELLYNCGIQLLHIGRPLAAFECLIEAVQVYHSNSRLWLRIAECCIAANKG
TSEQETKGLPSKKGIVQSIVGQGYHRKIVLASQSIQNVVYNDGQSSAIPVASMEFAAICL
RNALLLLPEDQQEPKQENGSKTSNQLSGNTENTESSEPCSNKSHEGDKFIAAPPSSPLKK
QELENLRCSILACSAYVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLD
RISDAITHLNPENVTDVSLGISSNEQDQGSDKGENEAMESSGKQTPQCYPSSVTSARTMM
LFNLGSAYCLRSEYDKARKCLHQAASLIHPKEIPPEAILLAVYLELQNGNTQLALQIIKR
NQLLPSVKTLSDMRKKPVFQPVHSIQPIQMPAFTTVQRK
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggccattaaggggcacaggaacaagagagctaagggacagcagtccttggagaaacag
agagcagatcaaggtactgaaaaacatgaaggagcaggtacttctgggattactgatcag
gaaaaggaattgtcgagcagcgcattacaagcttttcaggctggaaattatgatgcttgt
ttacaacacctaaatacccttcaagacataaacaaagatgactacaaaataactttgaat
actgctgttgcagagttctgtaaaagtaatcagactacgacagacaatttgagacaaacc
cttaatcagctaaaaaaccaggttcactctgttgttgaagaaatggatggtttggatgat
gttgagaacagtatgctgtactacaatcaagctgttatcctgtaccatctgcgtcagtat
actgaagctatatctgttggggagaagctgtaccagttcatagagccttttgaagagaag
tttgcccaggctgtgtgcttcttgcttgtagacttatacctgttaacttaccaagctgag
aaagccttgcatctgcttgctgttttggaaaaaatgatttcacaaggcaacaataatagc
aagaatggaaaaaatgagtcaggtaataataccaataaagattcctcgaatcaaaaagct
gaaagtggagctttaatagaagttgctaaatctaagatacatcagtataaggtgagagcc
tatatccagatgaagtcattaaaagcatgcaaaagggagatcaagtcggttatgaataca
gctgggaattcagctccttctctctttcttaagagcaattttgagtatttgagaggcaat
taccgtaaagctgtcaaacttttaaacagtgccaacattgctgaacatccagacttcatg
aaaacaggtgaatgcttaaggtgtatgttctggaacaatcttggctgcatccactttgca
atgggaaagcacaatttaggaattttttactttaaaaaagccttgcaagaaaatgataat
gcatgtgcacagctgggaacgggcagctcagatccaggtaaaaaattttcagggagaccc
atgtgtacactactgactaacaaacgatatgagttgctctataactgtggaattcagctc
ttgcacattgggaggcccttagctgcctttgaatgcctgattgaggcagtccaggtttat
cactcaaactctcgtctgtggctgagaatagcagaatgctgcattgctgccaataaaggg
acatcagaacaagagactaaaggtcttcccagtaaaaagggaattgtgcaatcaatagta
ggtcaaggctaccaccgtaagatagtcctagcatcccagtccatacagaatgttgtttat
aatgatgggcagtcctcagcaatacctgtagccagcatggagtttgcagcgatttgtcta
agaaatgccttgctgctactgccagaagatcaacaggagcccaagcaggaaaatggatct
aaaactagtaatcagttgagtggaaatacagaaaacactgaaagcagtgaaccatgcagc
aataaaagtcacgaaggggataaattcattgcagctcctccttcttcgcctttgaagaaa
caggaattggagaatttaaggtgctcgatccttgcgtgtagtgcttacgtggctctggct
ttgggtgataaccttatggcattgaatcatgcagataaacttctgcagcaaccaaagctc
tcagggtctcttaagtttctcgggcatttgtatgcagcagaagctctcatctctctagac
agaatatctgatgccatcactcacttgaaccccgagaatgtcactgatgtttcccttggg
atctcttcaaatgagcaggatcaagggtccgacaaaggagagaatgaggcaatggaatct
tctggcaagcagacaccacagtgttaccccagttcagtcacgtctgcacgaacaatgatg
ttatttaaccttggaagtgcttactgcttgaggagtgaatatgacaaagctcgaaagtgt
cttcatcaggctgcttctctgatccaccccaaagagatccctccagaggccatcctgctg
gctgtgtatcttgaactgcagaacggtaacacgcagctggcactgcagatcatcaagagg
aaccagctgctcccttctgtgaaaacactctctgacatgaggaaaaagcctgttttccag
ccagtccactcaatccagcccattcagatgccagctttcaccactgttcaaaggaagtga
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