Ficedula albicollis (collared flycatcher): 101820136
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Entry
101820136 CDS
T02815
Symbol
COL25A1
Name
(RefSeq) collagen type XXV alpha 1 chain
KO
K24356
collagen type XXV alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101820136 (COL25A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101820136 (COL25A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101820136
NCBI-ProteinID:
XP_005044969
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Position
4:23674483..23767813
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AA seq
493 aa
AA seq
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MVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGLT
GEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGVAGEKGEAGLKGDPGER
GEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPG
FIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTGEPGSRGPKGSKGDTGE
RGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPGPPGPQGLQGSKG
EPGSPGAPGVDGEQGPKGSKGDTGDPGMPGEKGGIGLPGLPGANGMKGEKGDVGLPGAQG
PSMIGPPGPPGPHGPPGPMGPHGLPGPKGVDGPVGPHGPAGPKGERGEKGTVGDPGPRGP
YGLPGKDGEPGLDGFPGPRGEKGDVGEKGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPL
GPDGLPMPGCWQK
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctcattaaacgc
cgcctcattaagggggaccaaggacaagctggaccccctggacctccagggccacctgga
cccagaggtcccccaggagacactggcaaagatggtcctcgtgggatgcctggcttaacg
ggtgagccaggaaaaccaggagaacaaggattgacaggacctcaggggcctccaggacaa
aagggttctgtcggagtgcctggtgttccagggagggatggacaagtgggtgaacctggt
ttgcctggtgtagcaggagagaagggagaagcagggctcaagggtgaccccggcgaaaga
ggagaaaagggggatgctggtgagaatggactgaagggtgacacaggagaaaagggtgac
cctggctcttctgcggctggaattaagggtgaacctggtgaatctggacggcctggacaa
aagggtgaaccaggccttcctgggcttcctggactccctggaataaagggtgaaccaggt
ttcattggtccacaaggagaacctgggttgccagggctaccaggaacaaagggtgacaga
ggagaggcaggccctgttgggaagggtgagcgaggtgaacctggaatccctggaccaaag
ggaaaaacaggtgaacctggatctagaggccccaaagggtcaaagggtgatacaggtgag
agaggtgacacagggtctgcaggtccacggggaccacctggacagaagggtgatcaaggt
gcaacagagataattgattataatggcaatatccatgaagctctgcagaggattgccacc
ctgactgtcacgggaccaccaggaccaccaggaccccaagggctacaagggtcaaagggt
gaaccaggatccccaggagccccaggagttgatggagagcagggtcctaagggctcaaaa
ggagacacaggtgatcctggaatgcctggagaaaaagggggaattggactgcctggccta
ccaggagccaatggcatgaaaggcgaaaaaggagatgttggtttgcctggtgcccaaggt
ccttcaatgataggaccacctggaccacccgggccacatggtcctccaggccctatggga
cctcatggactgcctggcccaaagggtgtagatggcccagttggtccccatggccctgca
ggtcccaaaggagagagaggtgagaagggaactgtaggtgaccctggacccagaggacca
tacggcttgcctggcaaagacggcgagcctggccttgatggtttccctggtcctcgagga
gaaaagggtgatgtaggagaaaagggagaaaagggggaaaagggaaagaaaggcaaaaaa
gggcctaaaggggagaaaggagaacagggtgctcctggattagatgcaccttgcccattg
ggtcccgatggattaccaatgcctggctgttggcaaaagtga
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