Ficedula albicollis (collared flycatcher): 101820261
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Entry
101820261 CDS
T02815
Symbol
TRIM54
Name
(RefSeq) tripartite motif containing 54
KO
K10653
tripartite motif-containing protein 54
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101820261 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fab04121
]
101820261 (TRIM54)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101820261 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
CYP38_PsbQ-like
RHH_9
Sina_RING
Zn_ribbon_FGT1_2
DUF5799
Motif
Other DBs
NCBI-GeneID:
101820261
NCBI-ProteinID:
XP_005062077
UniProt:
U3K8M6
LinkDB
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Position
Un
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AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHVGLRFDALYGILEERKKELLQSIAAEQE
AKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEPQMALYLQHSKELLKKITDMSKASMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGPGDGSEAATDEDRLDSLEVP
EAAEDAGPRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaagccgcttctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtgttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtcg
tgccggcacgaggtggtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacatcatcgacatctacaagcaggagtccgcccgaccccttcatgccaaggct
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctgtgcaaggtgttcggggcgcacaaggactgcgaggtg
gccccgctgccggccgtctaccagcgccagaagagcgagctcagcgacggcatcgccatg
ctggtggcggggaacgaccggatccaggccatcatcacgcagatggaggagatctgccac
accatcgaggagaacgggcggcggcagaagcagcacgtggggctgcgcttcgacgcgctc
tacgggatcctggaggagcgcaagaaggagctgctgcagagcatcgcggccgagcaggag
gccaagctgcagcgcgtgcgcggcctcatccgccagtacggagaccacctggaggcctcc
tccaaactggtggagtcggccatccaggccatggaggagccccagatggccctgtacctg
cagcactccaaggaactcctgaaaaagatcactgacatgtccaaggcatcgatgagcagc
cgccctgagcccggctatgagaacatggaccacttctccatcaacgtggactacgtggct
gagatgctgaggaccatcgagttccagacagagccactgggcgaggacgagggcgatgga
cctggggacggcagcgaggcagcgacggatgaggacaggctggacagcctggaggtgccc
gaggctgctgaagatgcggggccgaggcagaagccagcgagttctccccatggtcagcac
tga
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