Ficedula albicollis (collared flycatcher): 101820341
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Entry
101820341 CDS
T02815
Symbol
THOC2
Name
(RefSeq) THO complex 2
KO
K12879
THO complex subunit 2
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03013
Nucleocytoplasmic transport
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101820341 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
101820341 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101820341 (THOC2)
03041 Spliceosome [BR:
fab03041
]
101820341 (THOC2)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
101820341 (THOC2)
Spliceosome [BR:
fab03041
]
Complex C
Other components
EJC/TREX
101820341 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101820341 (THOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
101820341
NCBI-ProteinID:
XP_005045898
LinkDB
All DBs
Position
4A:complement(10349123..10400327)
Genome browser
AA seq
1620 aa
AA seq
DB search
MAALLPTEWIKNWEKGGKSEFVQLCRALSENKNHDVGFRDIQQALYELAYHVVRGNLKHD
QASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKNKRDHFTQLVLACLYLVSDTVLK
ERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLS
GNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTL
CHILGFKFKFYQDPSGETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIMEEHKREIV
EAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWHHAQSI
MDQMPPFYSTSHKPIAIALCQLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQAESF
EELRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMETLFSCLL
SITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKAQ
TIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYL
TSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYV
ANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKK
SSQRLKDALLDHDLALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFL
ASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQH
KVHKYITSCELVMAPVHEAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVN
KLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNWL
LAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDI
IYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGNK
ADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQAL
ERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVPATVQNG
PGGAGMPTSLTINTVRLEEGTTEETDKLKEKSQGVVKVINKTVNATPKVTTSNGNSASNS
KIIKEKDDKEKSGKEKDKEKKDKTPAATPEMKALGKDGKDKPKEERANKDEKAREIKEKT
PKSDKEKEKVKKEEKASKEEKSKTVVTIIESKSTVEKEREKEPSRERDLAKEMKSKENAK
GGEKVPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKGTAVLPKVPLVSENY
SSSRVISVHFLQDNLNELKDSSAKHYINHTTPTLSKSKEREVEKKDLDKSRERSREREKK
DEKDRKDRKRDHSNSDREVPQDSTKRRKDENGTTGSSKHSKSESPSDSPRLNEKEKEKNK
SKSSGKEKGDSIKAEKMEKSSSGSKKESRHDKEKTEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctcccgactgagtggataaagaactgggagaaaggcggcaagagcgag
ttcgtgcagctgtgtcgtgctctcagtgaaaacaaaaaccatgatgtgggtttcagagat
attcagcaggctttgtatgagcttgcttaccatgttgtaagaggaaacttaaagcatgat
caagcttctaatgttcttggtgatgtcatagaattccgagaagacatgccatctatccta
gctgatgtattctgcatattagatattgaaacaagttgtttagaagaaaaaaataagagg
gatcattttacacaactggtattggcctgtttgtatcttgtatctgacactgtcctaaag
gagcgtttagatccagagacactggagtcattgggactcatcaagcagtctcaacagttc
aatcaaaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaatttg
ctaagagaggagaatgaaggttatgcaaagctcattgcagaactgggtcaagacttatct
ggaaatatcactagtgatttaatccttgaaaatatcaaatctttaatagggtgtttcaat
cttgatcctaacagagttttggatatcatcctggaagtctatgagtgcaggcctgagtat
gatgatttctttgtaccactgatagaatcttacatgtacatgtgtgaacctcagactcta
tgccatatccttgggttcaaattcaaattttatcaggatccaagtggtgagactccttcc
tccttatacagagttgctgctgtccttttgcaacataatctcatagatttggaagatctt
tatgttcatcttctaccaggggataatgccatcatggaggaacacaagcgagagatagtg
gaagctaaacaaattgtcagaaaacttacaatggtcgtcttatcatctgaaaaaactgag
gaaaaggagaaagaaaaggaaaaagaggaggagaaaactgaaaagcctcctgataatcaa
aaacttggcttattggaagccttattaaaaattggtgactggcaccatgcacaaagtatt
atggatcagatgcctccattttactccacttcgcacaagccgattgcgatcgcgctttgc
caacttgtccacgtgacaattgagcctctgtaccgcagagttggtgtacctaagggagct
aaaggatcaccaatttcgtctttgccaaacaagagagcaccaaaacaagcagagagcttt
gaggaattgagaaaggaagtgttcaacatgctttgttaccttggtcctcatctgtcccac
gatcccattttatttgcaaaagtagtgcgccttggaaaagcatttatgaaagagtttcag
tctgatggaagcaaacaggaagataaagagaaaatggaaacactgttcagctgtctgttg
agtattactgatcaagtcttgcttccatctctttccttgatggactgcaatgcatgcatg
tctgaggaattatggggaatgttcaaaacctttccataccaataccggtaccgtctctat
gggcaatggaagaatgaaacatacaatagtcacccacttcttgtgaaagttaaagctcaa
accatagaccgagccaaatacattatgaagcggttaactaaggaaaatgtgaaaccctct
ggaagacaaattggaaagctcagccacagcaatcctacaattttatttgattatatttta
tctcaaatacaaaaatatgataacttgataactccggttgttgattccctgaaatacctc
acttccctgaactatgatgtcttggcatattgtatcattgaagcattggcaaaccctgag
aaggagagaatgaagcatgatgacactacaatctcaagctggctgcagagtctggcaagc
ttttgtggtgccgttttccgaaaatacccaattgaacttgcaggtctcctgcagtatgta
gccaaccagctgaaagctggcaaaagctttgatttgcttattttaaaagaggtagtacag
aaaatggcggggatagaaattactgaagaaatgacgatggaacaattggaagccatgact
ggtggagaacaactgaaagctgagggtggatacttcggccaaatcaggaatacaaagaaa
tcatctcagagattaaaagatgcgttattggaccatgatcttgccctcccactgtgcctg
cttatggctcaacagagaaatggtgtcgtctttcaagaaggaggggaaaaacatctgaag
ctggtgggaaaactgtatgatcagtgccatgacactctggtacaatttggtgggttttta
gcatccaatctaagcacagaggattacataaagcgagtgccttctattgatgttctttgt
aatgagtttcacactcctcatgatgctgcatttttcctctcaagacccatgtatgcacac
cacatttcatcaaagtatgatgaactaaaaaaagctgaaaaaggaaataaacagcagcac
aaagttcacaaatacattacatcatgtgagctggtgatggctcctgttcacgaagctgtg
atttctctgcacctccctaaagtttgggatgacatcagccctcagttttatgctacattc
tggtctttaacgatgtatgaccttgctgtgccacacagcagctatgacagagaagtcaat
aaacttaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaaaag
aaaaaagaaaaagaacgttgcacagctctgcaggacaagctccttgaagaggagaagaag
caattggagcatgtgcagagggttctacagagactgaaactagagaaagataactggctt
ctggcaaaatcgaccaaaaatgagaccatcaccaaatttttacagttgtgtatatttcct
cgatgcattttttcggcaattgatgcagtttactgtgctcacttcgttgaactggtgcat
cagcagaaaacacccaatttctccacacttctctgctatgaccgagttttctctgatatt
atatatacagttgcaagttgcacagaaaatgaagccagtagatatggcaggtttttatgc
tgtatgctggagaccgtgaccagatggcacagtgacagagtcatatatgaaaaggaatgt
ggcaactatccaggcttcctgactatattacgagcgactggctttgatggtggaaataag
gctgatcaattggattatgagaattttagacacgtggtacacaaatggcactataaatta
actaaggcttctgtgcactgtctggaaacaggtgaatatacacatatcagaaacatcctg
attgtgctgaccaaaatccttccatggtatccaaaagtgctgaacctgggtcaagccttg
gaaagaagagtgcacaagatatgtcaggaagagaaagagaagagacctgatctatatgca
ttggctatgggctattctggacagttgaaaagtaggaagcctttcatgatacctgaaaat
gaatttcaccacaaagacccacctgccaggaatgctgtacctgcaacagtacaaaatggg
ccaggtggtgctgggatgcctacgtctctcacaataaatacagttagactggaagagggc
actactgaggagactgataaactaaaggagaagtctcagggtgtggtgaaggttattaat
aaaactgtcaatgctacaccgaaggtgacaacaagcaatggaaacagtgcatctaatagt
aaaattattaaagagaaagatgataaagaaaaaagcgggaaggaaaaagataaagaaaaa
aaagacaagactccagctgccactccggagatgaaggcacttgggaaagatgggaaagat
aaaccgaaggaagaacgggcaaacaaagatgagaaagcaagagagatcaaggagaaaacg
ccaaaatctgacaaagagaaggaaaaagtgaagaaagaagaaaaagcttcaaaagaagaa
aagtccaagacggttgttaccatcatcgagtcaaagtcaactgtagaaaaggagagagaa
aaggagccatccagagaaagagatctagcaaaggaaatgaaatccaaggaaaatgctaaa
ggaggagaaaaggtgccagtagctgggtccttgaagtcacctgttccccgatcagaaaca
tcagaatctgaaagggaacaaaaacgtcgcaaagttgatacacattcttctccatcacat
tcctcaacagtaaagggcacggccgtgcttcccaaagtccctctggtttctgaaaactat
tccagctcacgtgtcatctccgttcattttctacaggacaacctcaacgaactcaaggac
tcttcagcaaagcactacataaaccacactactccaacactgtccaagagtaaggagaga
gaagtggagaagaaagatttggacaagtcaagggaaagatccagagagagagagaagaaa
gatgaaaaggacaggaaagatcgaaaaagggatcattcaaacagtgaccgagaggtacca
caggattcaactaaacgacgcaaagatgaaaatggcacaactggttcttcaaaacacagc
aaaagtgaaagtccttctgattcccctcgcttaaatgaaaaagagaaggagaaaaacaaa
tcaaaatcttcaggaaaagaaaaaggtgactcaatcaaggcagaaaagatggagaagagc
tcctctggtagcaaaaaggaatcaagacatgataaagaaaaaacagagaagaaagaaaaa
cgggacagtactgggggaaaagaagaaaagaaacatcataagtcttcagacaagcataga
taa
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