Ficedula albicollis (collared flycatcher): 101820345
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Entry
101820345 CDS
T02815
Symbol
VPS18
Name
(RefSeq) VPS18, CORVET/HOPS core subunit
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04140
Autophagy - animal
fab04142
Lysosome biogenesis
fab04145
Phagocytosis
fab04148
Efferocytosis
fab05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
101820345 (VPS18)
04142 Lysosome biogenesis
101820345 (VPS18)
04140 Autophagy - animal
101820345 (VPS18)
04148 Efferocytosis
101820345 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101820345 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101820345 (VPS18)
Membrane trafficking [BR:
fab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101820345 (VPS18)
Hops complex
101820345 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_Vps41
zf-RING_16
zf-RING_2
zf-RING_UBOX
zf-RING_5
aq_1631
Lact-deh-memb
zf_RING_Vps8
Nup54_57_C
DUF8221
STX17_N
zf-ANAPC11
LETM1_C
RBSN_mid
DUF5600
zf-C3HC4
zf-rbx1
DUF1664
KNOX2
Motif
Other DBs
NCBI-GeneID:
101820345
NCBI-ProteinID:
XP_005047094
LinkDB
All DBs
Position
5:25342001..25351477
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLHRSASVPQGRASVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGTETNTGPILVGTSQGQIYEAEISVSEGS
LFSTNPDQYFRQVYTLEEESGPAPVCCLEIERGIEGKFFIIATTRKRLFQFVGKVPEGTE
QQGFSSIFAVHADHLPSFREFPANLGFSEIAFYTPKLRSSPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPADIDITVNKPISIVLTQFHFLLLLSDRVKAVCTLNGQVVFQDLFL
EKFGSLTRMIKDPTVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLSNL
KPSEKTQTTLLTTWLTELYLNWLGILQGDPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHRACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAVCDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKSHHRPKDADTISLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggacgagtacgaggactcgctgcaccgctccgcctccgtgccgcag
ggccgcgccagcgtgggcatcccgcactccggatatgtcaatgcacgactggagaaggaa
acgccaatatttaacaagcagaggattgattttgctcctccagagaaaattaacagctta
gtggtctcctctaaccagctctgtatgagccttgggaaagacacccttctcaggattgat
cttgggaagccagatgaacctaatcaggtagagctgggacgcaaagatgaagccaaagtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctctgaacaccagcgaa
tgcctttacctgaatagaagtgttcagaaagtgcgggcgctctcccgctggaaaggacac
ttgattgaaagtgtgggctggaacaaatttcttggtacagaaaccaacacagggcctatt
ctggtggggacatcccaggggcagatctacgaggctgaaatctctgtcagtgaaggaagc
ctcttcagcactaaccctgatcagtacttccgacaggtctacactctggaggaggaatct
ggacctgccccagtctgctgcttggaaattgaacgagggatagaagggaaattttttatt
atagccaccactaggaagagactctttcagtttgttggcaaagtgcctgaagggacagag
cagcaaggcttcagctccatatttgctgtgcatgctgaccatctgcccagctttcgggag
tttccagctaacttgggtttcagcgagatagccttttacactccaaaactgcgttccagc
cctcgctcctttgcctggatgatgggaaatggtgttttatatggtacattggattacagt
cgtcccgattcaattctgagtgatgagcgggtatgggtttatcctgctgatattgacata
actgtgaacaagccaatatccattgtacttacccagttccacttcctgttgctgctgtct
gaccgagtgaaggctgtctgcactctgaatggacaggttgtttttcaggatctgttcctg
gagaagtttggctcgctgacacgcatgattaaagatcccacagtccagcagatatggatc
cacactgagaaagtcgtgttccgctaccatgtccagcgggaatctagagacgtgtggaag
atgtatatgaatatgaacaaatttgatttagcaaaagagtattgtaaggaccgtccagag
tgtcttgacattgtgttggccaaagaggcagagcactgcttccagaacaagaggtatctg
gacagtgccaaatgttatgcactgacgcagaactactttgaggaaattgctctgaagttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaaactaagtaaccta
aagccttcagagaagacacagaccactctgctgaccacatggttgacagagctgtacctg
aactggctgggtatattgcaaggtgacccctcacagcgaaatctctatttggatacacgg
gagaagttccgcactttcctgagcagtcctaaaaacaaagactgtctttttaataaccgg
gcatctatttatgagctgttggcaagccatggcgacacagagcacatggtctactttgca
gtcatcatgcaggattatgagcgtgtagtagctcaccactgccagcatgacgagtacgat
gaggctctaaacgtgttgtctaggcatagagatgagaaactcttctacaagttctctcca
gttctcatccagcatattcccaagaaggtagttgatgcttggatttctatgggctctaga
ctggatgccaggaacctcattccagcccttgttaactacagccagagtgccagcacccag
cagatcaatgaagccattagatacatggagttctgtgtctaccagctggaggaaacccag
caagccattcacaactacctgttgtctctttatgctttgtgtcggccagactcgctgctg
tcatacctggagcaagcaggaaccaacccaaacaggatccactacgacctgaagtatgca
ctgcgcctgtgtgcagagcacgggcaccaccgtgcgtgtgtccacatttacaaagtgatg
gaattatatgaggaggctgtggatctcgccttacaggtggatgttgatcttgccaagtcc
tgtgcagatcttcctgaagatgatgaggaactccggaagaagctgtggttgaagatcgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgtctctccagctgt
gctctgctgaagattgaagatgtgctgccattctttccagactttgtcactattgaccat
ttcaaggaggcaatctgtaactccctggaggattacaacaaacacattgaggagctgaaa
agggagatggaggaggccacacagagtgccaagaggatccgagaggacatccaggaaatg
agaaataagtatggctctgtggagcctcaagaaaaatgtgctgtttgtgactttccactt
ctaaaccgccccttttaccttttcctgtgtggtcacatgtttcactatgactgtctcctc
caagcagttttcccaaaccttcctgcctataagcaggcaaaacttgaagatcttcagaag
aagctggcagctaccagccagccatccaagagccaccatcgtcccaaggatgcagacacc
attagcctggggaaggggcagcagagccgggaacagatcaaagctgacattgatgatatt
gtggcagctgaatgtgtgtactgtggtgagctgatgatccggtccattgacaagcctttt
attgatccccaaaagtatgaagaggaaatgcaaagctggctgtag
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