Ficedula albicollis (collared flycatcher): 101820669
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Entry
101820669 CDS
T02815
Symbol
SCAF8
Name
(RefSeq) SR-related CTD associated factor 8
KO
K13191
RNA-binding protein 16
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fab03021
]
101820669 (SCAF8)
03041 Spliceosome [BR:
fab03041
]
101820669 (SCAF8)
Transcription machinery [BR:
fab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101820669 (SCAF8)
Spliceosome [BR:
fab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
101820669 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101820669
NCBI-ProteinID:
XP_005043713
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All DBs
Position
3:complement(55261376..55327438)
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AA seq
1333 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPSTTAAMSNNTPGTPVTPVTPANVTQSLPDPWVSQIANTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLM
DRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQ
PQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVEANVDDSMDIQQQDMDIDEGQDIAEE
EIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDV
DLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEWETARSSEAAKENTQTTQSATVDKST
VITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFPVTMSVPPPGYSPIPPPPFLRASFNP
SQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLVQPPLPIAQETMKDVPFTGLVLPVGT
VTSNLATPTLSAGSVFNPLPINKPESDDKGSHLTDLQISSSESNRSVQSDVSSSSGLVGG
VQPPSVSSNSGLTGEGPPPTVSSSSGLAGGVQPPSVSSSSGLVGGVQPPTVSSNSALAGG
MQLPAVSSSSSLAGGIQPTNASNSSGLMAGGPPPNVSSSSGLLAGVHPPSVSSSPGLLTG
MQPPSVSSSSGVLAGVQPPSVSSNSGLLMMPPPNVSTSSGLMGVPPPNISSNSGLLAMQH
PAAVPNMPHLNISNQRMPGMPLIDIRPSLMPHSPGPRFPLMQPGMPPQRTIPPPAILDPS
LHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDTISNPEKRLPLGGDNIQQEGDRDYRFPP
VENRDNLNRPSPVDVRDSVGRPPVDPREGLGRPPVDGREHFPRPHIDMRENFGRPGIDNL
GRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKGFHEDRERFRHVNYRFDSRSGPSWN
RGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREINGNRFGRDRMPNNWIPPPHPRVFEY
FDGATSQRKADNMPQVNGENTETESQPPTAQVQDDPELYEKLTSSVEINKEKSDTEADIE
NEPVVESTETEGT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcaccaaggcagcaatcaaggctataaagttctacaagcatgttgtgcag
agtgttgagaaattcattcaaaagtgcaaaccggagtacaaggtgcctggtctgtatgtc
attgactccattgtgagacaatcccggcatcagtttgggcaagaaaaggatgtatttgca
ccaagattcagcaataacatcatcagcactttccagaacttgtaccgttgtcctggtgat
gacaagagtaaaattgttagagtgctaaatttatggcagaagaataatgtgttcaagagt
gaaattattcagcctctcttggatatggcagcaggaattcctcctcccgttgtgacccct
gtcttgcccagcactacagctgctatgagcaacaatacgccaggtacacctgtgactcca
gtcaccccagccaatgtgacgcagagtttacctgatccttgggtatctcagattgctaac
acagacacccttgctgctgttgcacagattttacagagtcctcaaggccaacagcttcag
cagttgatacagacactgcagatacagcagcagaaacctcagccttctctacttcaagcc
ctggatgctggtcttgtcgtccagttacaggccctcacagcacaactcacagctgcagct
gctgctgctaacacacttaatccactggaacagagtgtctcttttaataagaagctgatg
gacaggtttgactttggagaagaatctgaacaaaatgaagagcctaaaaaggaaactccc
tcctcccaattgccattagtaccagaatccgtgaacaactcactttttcaccaactagct
gaacagctgcaacagcaaaatttagaacatctcagacaacagcttctggagcagcagcag
cctcaaaaggcaagtcctgaggagaatcaagaaggaaattttggttcagagcactctgcc
tcaccatcacaagggagtagtcagcagcagtttttagaagtggaagcaaatgtagatgat
tcaatggatattcaacagcaggatatggatatagatgaaggtcaggatattgctgaagaa
gagatttttgaacaagaagaaaagaaatcagctgttcgttcaagatcaagaactcgttca
agatctcgttcaaggtcaccaagaaaacgaaggtctagatcacggtctggttctcgtaag
cggaagcaccgaaagcgttcacgctcaagatcaagagaaaggaagagaaagtcatctcgg
tcatactccagtgaaagaagggctagggaaagggaaaaagaacgtcagaaaaagggattg
cctcctatacggtcaaaaacactaagcgtttgcagtactactctttgggtaggtcaagta
gacaagaaggctacacagcaagatttaacgaacttgtttgaagaatttggacaaatagag
tcaattaatatgattcccccaagaggatgtgcttatgtctgtatggtacatagacaagat
gcatatcgtgctcttcagaaacttagttctgggtcatataaaattggatctaaaattatt
aagattgcttgggctttgaataaaggtgtgaaaacagaatacaagcaattctgggatgtg
gatctgggagtttcctatattccatgggagaaagtgaaattggatgatttggagggcttt
gctgaaggtggcatgattgaccaggaaacagttaatacagagtgggaaacagccagaagc
tcagaagctgctaaagaaaatactcaaacaacgcagagtgctacggttgataagagtacc
gttattacaacacagacagaagcttacacacaaccagtcactatgctgcagattccagta
gctccagctgtgcctgctgttagcttggttccacctgcgtttcctgtcacaatgtctgtc
cctcctcctggttatagtccaattcctcctccacccttcttgagagcaagtttcaacccc
tcacagccacctccaggttatatgcctcctccagttccgcctgttgttccaccacctgtt
gtcccaccacctgttgtcccaccagttgttccaacacctttagtacagcctccattacca
attgcacaagagacgatgaaggatgttccttttactggccttgttctaccagttggtaca
gttactagcaatctagctactccaacattatctgctggaagtgtttttaatcccctgcca
atcaacaaaccagaatcagatgacaaaggatcacatcttacagaccttcagatttcttcc
agtgaaagcaacagatctgtgcaaagtgatgtctcaagtagctctggacttgttggagga
gtgcagccacccagtgtctcaagcaattctgggcttactggagaagggcccccacccact
gtctcaagcagctctggacttgcagggggagtacagccacccagtgtttcaagcagctct
ggacttgtaggaggagtgcaaccaccaactgtttccagcaattctgctcttgcaggagga
atgcagctacctgctgtctccagtagctcttcccttgctggcgggattcagccaactaat
gcctcaaatagctctggacttatggctggagggccaccaccaaatgtctcgagtagctca
gggcttctagctggagttcatccacccagtgtctcaagcagccctggccttctgacagga
atgcagccacccagtgtgtccagtagctcaggagttctggcaggagtacagccaccaagt
gtttcaagcaactctgggcttctcatgatgccaccacccaatgtttcaactagttctgga
cttatgggagtgccaccaccaaatatttcaagtaattctggacttctggcaatgcagcat
ccagctgcagttccaaacatgcctcatttaaatatcagtaatcaaagaatgccaggaatg
cctcttatagatatccgtccaagcctaatgccccattcacctggaccaaggtttccacta
atgcagccaggaatgccaccacagcgtactattcctcctcctgcaatccttgatccatct
cttcacccaccaccacctcgaggtccttttcctccaggagatatttttaatcaaacagaa
aggccttttggaacaccaggaagacaaaacatcgataccatttctaatccagagaaaagg
ctaccacttggaggtgataacattcaacaggagggagacagagattatcgctttcctccg
gtggaaaaccgagataatcttaacagaccatctccagtggatgtcagagattctgttgga
cgaccaccagttgatccaagagagggtttaggaaggcctccagtagatggaagagaacac
ttcccaagaccacatatagacatgagagaaaattttggaagaccaggtatagataacctt
ggccgaagagagcattttggtttcaattcagacaagcactggggacagagaggagattat
gatgaaagagagcaccatgccttccctatttatggtggtcccaaaggcttccatgaagac
agagagaggtttcggcatgtaaactatagatttgatagtagaagtggtcccagttggaac
agaggatttgaacaagatgctcacagagattttgatgaccgcagaagaccctgggaaaga
cagagggatagggatgacagagattttaatttttgcagagaaattaatggaaacaggttt
ggaagagacagaatgccaaacaactggatcccgcctccacatccacgggtttttgaatat
tttgatggggccacttctcaacgcaaagctgataatatgccccaggtaaatggtgaaaat
acagagacagaaagtcagccaccaactgcacaggtgcaggatgatccagaactttatgaa
aaactgacatcttccgtcgagataaacaaagagaagagtgacacagaagctgatatagag
aatgaaccagtggtagaaagcacagaaactgaggggacataa
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