Ficedula albicollis (collared flycatcher): 101820734
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Entry
101820734 CDS
T02815
Symbol
COL9A1
Name
(RefSeq) collagen type IX alpha 1 chain
KO
K08131
collagen type IX alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101820734 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101820734 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101820734 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
fab00535
]
101820734 (COL9A1)
Proteoglycans [BR:
fab00535
]
Extracellular matrix (ECM) proteoglycans
Others
101820734 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101820734
NCBI-ProteinID:
XP_005044166
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Position
3:86847452..86912791
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AA seq
919 aa
AA seq
DB search
MKSHWKITAFFYLCSFLWSFISATIQHQSRLPAILGASHRIDICPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIERVVGSTSLQVAYKLGPSVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGQVKSVEFSYKGADGKHQTASFLHLPFLFDSQW
HKLMIIVEANSVTLFIDCIKIESLNIKPKGKINTDGFAVLGKLKNNPQISVPFEIQWMVI
HCDPLRPQREGCGELPARATQTEVERGPPGPPGPPGPPGPPGVPGIDGIDGERGPKGPPG
PPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGAPGPKGQKGEPGLPGARGLPGKGILGP
PGPAGVAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPPGTIGLQDGDLLCPSACPPGRPGH
AGLMGMKGQKGAKGESGEPGKQGYKGEEGDQGPSGEVGAQGPPGILGIRGITGIMGPKGT
KGARGLDGDPGPQGLPGAPGDQGQRGPLGETGPKGERGPQGTRGINGLPGPKGEPGLPGV
DGREGIPGMPGAKGEPGKPGAPGDAGLQGLPGFPGSPGMKGIPGPKGNRGRPGVPGLMGN
SGKQGQQGPEGEAGPTGPQGPPGSRGETGPAGPPGLPGKLGPVGNIGLPGLPGPPGLPGG
KGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAVGNPGDPGSRGPEGIRGL
PGMEGPRGSPGPRGLQGEQGAPGLPGSEGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLR
RPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGERGE
RGFPGRGLKGHPGPRGLPGEPGKASYGMEGRDGDRGAPGVAGQPGVPGPPGPPGPPGYCE
PASCRVQAGQRAGKNMKGP
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccactggaaaattacagctttcttttacctgtgtagctttctgtggtctttc
atctcagccaccatccagcaccaatcaagactacctgctattctgggtgccagtcacagg
attgatatctgcccaaccatcaggattggccaagatgacttaccaggctttgacctgatt
tctcagtttcaaatagaaaaagctgcttcccaaggaattattgagagagtagtgggatcc
acttctctacaagtagcttataaattgggacccagtgtagacttcaggataccaaccagt
gccatatattccaatggattgcctgatgaatattcctttctaactacttttcggatgact
ggagccacacttcagaaatactggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtcaagtgaaaagcgttgagttttcttataaaggagca
gatggaaaacaccaaacggcatcatttttacatttgcctttcctgtttgactcccaatgg
cacaagcttatgataattgtggaagcaaacagtgtcacactttttattgactgtattaaa
atagaatccttaaacataaaaccaaaagggaaaatcaacactgatggctttgctgtgctt
ggaaaacttaaaaataatcctcaaatttcagttccgttcgagatccagtggatggtgatc
cactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgccggctcgggcaacc
cagacggaagtcgagagaggtccccctggcccaccaggccccccaggtccaccagggcca
ccaggagttcccggtattgatggcattgatggggagagaggcccaaagggcccccctggt
ccaccgggtccagatggagatgcaggcaaaccaggatcccctgggctgcctggagagccg
ggagctgatggattcacaggacctgatggctcacgtggagccccaggaccaaaaggacag
aagggggagccaggactgccaggtgctcgtggacttccaggcaaggggattcttggacca
cctggtccagctggtgtagcaggacttccaggggaagtaggtcgtgctggtccacctgga
gatccgggaaaaagagggccaccagggctgccaggacctccagggccaccaggaacgatt
ggcctgcaagatggcgacctcttgtgtcccagtgcttgtccgcctggccgtccaggacat
gctggcttaatgggaatgaaggggcaaaaaggtgcaaaaggagagtctggtgagccagga
aaacaaggttataagggtgaagaaggggaccaaggacccagtggtgaagtgggagctcaa
ggccctccaggcattctaggtatcagaggtataactggtataatgggtcctaaaggtacc
aaaggagctcgtggtcttgatggtgatcctggtccccaaggtcttcctggtgcacctggg
gatcaaggacagagaggtccactaggagagacaggtccaaagggagaaaggggtcctcaa
ggtacaagaggaataaatggcctccctgggcctaaaggagagcctggcttaccaggagtt
gatggccgtgaagggatccctggaatgcctggagctaaaggtgaaccaggaaaacctgga
gctccaggtgatgcagggctccagggattgccaggtttcccaggctctccaggtatgaaa
ggcattcctggcccaaagggtaatagaggtcgtcctggggtgccagggttaatgggaaat
tctggtaaacagggtcagcagggcccagagggagaagcaggtccaacaggaccccaggga
ccaccaggtagcagaggggagacaggtcctgcaggtcctccaggtttaccagggaagttg
ggtcctgtgggtaacattgggcttcctggactgcctggtcctccaggccttcctggtggt
aaaggtgaccggggttcggtgggtgaaccaggacctaagggtgaacaaggtgcacctgga
gcagaaggagatggaggagaaaagggtgacttaggtgacatgggattaccaggagcaaag
ggagctgttggtaatcctggagaccctggttcccgtggacctgagggaattcgggggctg
cctggcatggaagggccacgaggttctcctggaccacgaggcttgcagggtgagcagggt
gccccaggcctgcctggcagcgaaggtccagctggaaaagaaccaagtgatcagcacatt
aagcaggtttgcatgagagtcatgcaagaacaattagctcagctggcagccagccttagg
aggccagaatttggtgctccaggtctccctggccgaccagggccaccaggtgctccagga
cctgctggtgaaaatggtttccctggacagcttggcccccgtggcctgcctggccttaaa
ggtccccctggtgagattggtcgtaaaggtcctaaaggtgaaccaggagaaagaggagag
agaggatttccaggcagaggactgaaaggtcatcctggaccaagaggtcttccaggtgag
ccaggcaaggccagctacggcatggagggccgtgacggtgaccgaggtgcccccggggtg
gccgggcagcctggggtccctggtccccccggtcctcctggccctcccgggtactgcgag
ccagcctcctgcagggtgcaggcaggacagagagcagggaagaacatgaaagggccctga
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