Ficedula albicollis (collared flycatcher): 101820855
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Entry
101820855 CDS
T02815
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101820855 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fab03000
]
101820855 (CNOT4)
03019 Messenger RNA biogenesis [BR:
fab03019
]
101820855 (CNOT4)
04121 Ubiquitin system [BR:
fab04121
]
101820855 (CNOT4)
Enzymes [BR:
fab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101820855 (CNOT4)
Transcription factors [BR:
fab03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101820855 (CNOT4)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101820855 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101820855 (CNOT4)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101820855 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
101820855
NCBI-ProteinID:
XP_005039627
LinkDB
All DBs
Position
1A:48093019..48170864
Genome browser
AA seq
761 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKT
PPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNP
VIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAPEPQ
SLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQPSL
SPTSLQNPTPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHRAVYNSFSF
PGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSVESL
NMKEWQDGLRALLPNININFGGLPNASSPSNANHVPTSNTATTDSLNWDSPGSWMDPAII
TGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHRASWN
PYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgacgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggaaattgatgacatcaatttcttcccttgcacctgtggctaccaaatctgtcgtttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcagaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacacttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagtacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgccctcagagccatacagtgcgtcaataatgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgaactaggtgatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaattaaaccccaactttctccaattatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagagacccaacagtaataacaaagatgcctgg
ccatcattacagagttcaagtaaatcagccaacggtttaacaatggaacacaggaaaacg
cctcctatattagaaaatggcacagacccagaacacatgactccagatggtgcagactca
gatttcggccctatcgataaaccttcagattccctcagtataggaaatggtgacagctct
cagcagataacaaacagtgacacaccttcaccaccacctggtttaacaaaacccaatcca
gttatacccatcagttcatctaatcacagtgcacggtctccttttgaaggggctgtaaca
gaatcacagtcactcttctctgacaacttccggcaccctaaccccatccctagtgggctt
cctccattccccagctctccacagacttcaagtgactggcccacagcaccagaaccacag
agcctcttcacatcagaaactataccagtatcctcctccacagactggcaagcagctttt
gggtttggttcctccaaacagcaagaggacgacttagggtttgatccctttgacatcacc
cgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaaccttccctt
tcgcccacatctcttcagaaccctaccccacacactacaactgccaaagggccaggttct
ggattcctgcatcctgctgcacccacaaatgccaactctctcagtagcacctttccagtc
atgccacagagatttccacagtttcaacagcatcgagcagtttacaactccttcagtttt
ccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatcatgcacttg
aaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctcccaccacaa
cacagcacaggtctgggagggatccctatatcagacaacagcagttctgtagagagttta
aatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaacatcaacttt
ggtggactgcccaatgcttcttccccctccaacgccaaccatgtaccaacgtccaacact
gccaccaccgacagcctgaattgggacagccctggcagctggatggaccccgcaatcatc
acaggtatcccagcctctacaggaaacagtttagacacccttcaagatgacaatcctcca
cattggctaaaatctcttcaggccctcacagaggtggacggccccagtgcagcaccatca
cagacgcaccacagtaaccccttcggcacacagatccctctgcacagagccagttggaat
ccctactctcctccttcaaaccccaccagcttccattccccacctccaggctttcagaca
gccttcagaccccccagtaaaacccccacagatctactacagagctcagcgctggatcgt
cattag
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integrated database retrieval system
