Ficedula albicollis (collared flycatcher): 101820880
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Entry
101820880 CDS
T02815
Symbol
DDX46
Name
(RefSeq) DEAD-box helicase 46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101820880 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101820880 (DDX46)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101820880 (DDX46)
Spliceosome [BR:
fab03041
]
Complex A
U2 snRNP components
U2 related factors
101820880 (DDX46)
Complex B
101820880 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
101820880
NCBI-ProteinID:
XP_005053864
LinkDB
All DBs
Position
13:complement(9592314..9610268)
Genome browser
AA seq
1057 aa
AA seq
DB search
MVTKNRGSEEEETVTVKVSLHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRR
RERSRSRDKRRSRSRDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPS
KNRKTENRSRSKEKTEGVEVSKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRK
RKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGSEVED
EELDPLDAYMEEVKEEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKAAAESEKKKG
ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPEL
AKMTQEEVNVYRLELEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQA
IPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQIT
KECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRR
VTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQ
VGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRA
SYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYED
YVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWADFKDQQKA
EGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFN
SKKRVKDMAAPGTSNAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQ
QATNAILRGGTIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEE
ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN
ELAVQKAKAEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccaaaaataggggatcggaggaagaggaaacggtcacagtcaaggtctctctg
cattaccggaagcgctctgcgtcgcggggacgctctgggagccgctccaggagccgctcc
ccgtcggacaagaggaaacgcgaggaccggcgctccaggagccgggaccgggatcgcagg
cgggagaggtcgcgcagcagggacaagagaaggtctcgctcgcgggacagaaagcgtcaa
agacgttcaaggagtagagaaagggaacggagccgagagagaagacgatcgcggagccga
gagaggaggcgctcaaggagcaggagcagagggagacggtctcgatcttccagtccaagc
aagaacagaaagacagaaaacagatcaagatctaaagaaaagacagaaggtgtggaagtt
tccaaagaaaagaaaaaagacaaagatgacaaagaggaagagaaggataaagatgctacc
acaaatgctgtggccactgagaattttgatcagaacaaactagaggaagaaatgagaaaa
cgaaaagaaagagtggagaaatggagggaagaacaacgcaagaaggcaatggaaaacata
ggagagctaaaaaaagaaattgaagaaatgaaacaggggaaaaaatggagtttagaagat
gatgatgatgatgaagaggaaactgcagaaggagaaaaagaaggcagtgaagttgaagat
gaggagttagatcctttagatgcttatatggaagaagtaaaagaagaggtcaagaagttc
aatatgagaagtgtgaagggtggaggtgggagtgaaaagaaaactggaccaactgttacc
aaggtggtaactgtggtgacaaccaaaaaggcagctgctgagtcagaaaagaagaaaggg
gagctcatggagaatgaccaagatgcaatggagtattcctcagaagaggaagaagttgat
cttcagactgccctgactggctatcagaccaagcagagaaagctgctagaaccagtggat
catggaaagatagaatatgaacctttcaggaaaaacttctatgttgaagtaccagaacta
gctaaaatgactcaagaagaggtaaatgtgtaccggctggagctggagggaattacagtc
aagggaaaaggctgtcccaaacccataaaaacctgggtacagtgtggtatttccatgaag
attctcactgccctcaaaaaacatggctatgaaaagcccactccgattcaaacccaggct
atcccagcaattatgaacggacgggatttgattggcattgctaaaacaggaagtggaaaa
actattgcatttctgttgcccatgttcagacacattatggatcagagagcattagaagaa
ggagaaggtcccatagctgtcattatgacacctacacgtgagttggctttgcagattacc
aaggagtgcaagaaattctcaaagacacttgggcttcgagttgtgtgtgtttatggagga
acaggaatcagtgagcagatcgctgaactcaaaagaggtgctgaaattattgtttgcaca
cctggacgtatgattgacatgttagcagctaacaatggtcgggtgacaaacctccgtaga
gtcacatacgttgtacttgatgaagctgacagaatgtttgacatggggtttgagcctcag
gttatgcgcattgtagacaacgtcaggcctgaccgtcagactgtcatgttctctgctact
tttcccagagctatggaggccctggctcgcaggatcctcagtaaacctatagaggtgcag
gttggaggcagaagtgttgtctgttctgatgtggagcaacatgtgattgtcatagaagag
gagaacaaatttctaaagttactggagctgctgggacattatcaggagaaaggatctgtt
atcatatttgtagataagcaagaacacgctgatgggttgttgaaagatttaatgagggcc
tcttacccttgcttgtctcttcatggaggtattgatcagtatgacagggacagcatcatt
aatgacttcaagaatggaacctgcaaacttctggtggccacatctgtagcagcgaggggc
ttggatgtgaagcagctgatgctggtggttaattacagctgtcccaaccattatgaggac
tacgtgcaccgagcgggccgcactgggcgagctggcaataaagggtatgcatatacattc
attactgaggatcaggcacgttatgctggtgatatcattaaggctttggaattgtctggg
aatccaattcctgctgatttggagaagctctgggctgacttcaaagaccaacagaaggct
gagggaaagttgattaaaaaaagcagtggattctctggcaaaggttttaaatttgatgaa
acagaacaggctttggctaatgaaagaaagaagctacaaaaagcagctcttggcttgcaa
gattcagatgatgaagatacagctgttgatattgatgaacaaattgaaagcatgttcaat
tcaaagaaaagagtaaaagacatggcagcaccaggcacatcaaatgctcctacaccatca
gctgggaatgcagaaaaattggaaatcgcaaaaagattggctttgagaatcaatgcacag
aagaatcttggagcagaggcacaagtcatggttcccttccacttcaaggatgtgatgcag
caggctacaaatgctatcctgagaggaggcacaattcaagctcctactgtgtctgccaag
accattgcagagcaactggctgaaaaaatcaatgccaaactcaattatgtacccatagag
aagcaggaggaagagaaacaggatggaggacagaatgaatccttcaaaagatatgaagaa
gaattggagatcaatgacttcccacagactgccagatggaaagttacctccaaagaagca
ctgcagagaatcagtgaatattctgaagctgctattacaatcaggggaacttacttccct
ccaggcaaagaacccaaggaaggagaacgaaagatttatttggctatagaaagtgccaat
gaattggctgtacagaaagcaaaggcagaaatcacacgactcataaaagaggagctcatc
agattgcaaaattcttaccaaccaaccaacaaaggaagatacaaagttctatga
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