Ficedula albicollis (collared flycatcher): 101821019
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Entry
101821019 CDS
T02815
Symbol
PMS2
Name
(RefSeq) PMS1 homolog 2, mismatch repair system component
KO
K10858
DNA mismatch repair protein PMS2
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03430
Mismatch repair
fab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101821019 (PMS2)
03460 Fanconi anemia pathway
101821019 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101821019 (PMS2)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101821019 (PMS2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101821019
NCBI-ProteinID:
XP_005054715
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Position
14:complement(14761543..14773424)
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AA seq
947 aa
AA seq
DB search
MMQQDGTRPAGHSHRTGKELGTAIQTPSACSGPGPASAPPARPFTVPRSSHGPRRGSAFP
SVPVSPPGSLGKPQWVRCPSLRSPQPAGPIRPIERRSVHRICSGQVVLNLGTAVKELVEN
SLDAGATNIDIKLKDHGAELIEVSDNGAGVEEENFEGLTLKHYTSKIQDFSDLIHVETFG
FRGEALSSLCALSDVTIFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVSIQQLFYT
LPVRHKEFQRNIKKEYAKMVQLLQAYCIVSKGVRINCTNQVGQGKKSCVISTAGSPSLKE
NIGAVFGQKQLQSLIPFVQVPPSEAVCEEYGLNPADMPQNLYSITGFVSRCDHGVGRSTT
DRQFFFINQRPCDPAKVVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILL
QEEKFLLAILKTSLMEMFGSDVNKLNVNQKLLDIAGNLKKTIPEETEKPQAEILSDSETE
SPSGEGKRIMTLARLRESFSLHQATESNFKSSKKVKQQHHSPRQRLLGTPGSTVKIQKAV
LPKEAETCQKFDSKVSVPRRHLRKLEDTADSGSCSISESDAGCSTPEAVSCINSESAVNS
EEEFCSTEEQMEKECLKTAECSKKSLDNDVQVLGTEPKLDQVNDWTDQNKFSQEANNCSP
RVKRFKSRNFKSEADDSKAGKYPEVENTSVDVLVEVKKKIVPLEFSMKVLAEKVKKVIQQ
QQKNADTENYRRFKAKISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDL
FIIDQHATDEKYNFEMLQQHTVLQPQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVI
NENAPVTQRVKLVSLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASQACRKS
VMIGTALNVQEMRKLITHMGEIEHPWNCPHGRPTMRHIVSLDLISPE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcaggacggaacgaggcctgctgggcactctcacaggaccggcaaggagctg
ggcacggccatccaaaccccgagtgcgtgcagcggccctggccctgcctccgcaccccct
gccaggcccttcacggtaccgcgctcctcgcacgggccccggcgcggttccgccttcccc
tcggttcccgtctcccctcccggctccttggggaagcctcagtgggttcgctgtccctct
ctccgcagcccgcagcccgccgggcccatccggcccatcgagcgccgctctgtccatcgc
atctgctcgggccaggtcgtgctgaacctcggcactgcagtgaaggagctggtggaaaac
agcctggatgccggagctaccaacatcgatataaaacttaaagatcatggggcagaactg
atagaagtttcagataatggagctggagtggaagaggaaaactttgaaggcttgactctg
aaacattacacatcaaagatacaagatttttctgatctaatacatgttgaaacatttggg
tttcgaggtgaagctttgagttcactatgtgcattaagtgatgttaccattttcacctgt
cataagtcagcaaaggttgggactcgtttggtgtttgatcacaatggcaaaatcactcag
aagactccattcccacgacagcaaggaacaactgtcagcatccagcagctgttttatacg
ttaccagtgcggcataaagagttccaaaggaacatcaaaaaggaatatgcaaaaatggtc
cagctgttacaggcctactgtattgtttccaaaggagtgcggattaactgcactaatcaa
gttggccaagggaaaaaaagctgtgtgatatccactgctggaagtcccagtttaaaggag
aacattggagcagtatttggacagaaacagttgcagagccttattccttttgttcaggtt
cctcctagtgaagctgtttgtgaagaatatggactcaaccctgctgacatgccacaaaat
ctttatagtattactggcttcgtttctcgttgtgatcacggtgttggaaggagcacgaca
gacagacagttcttctttatcaaccaacgtccctgtgatccagcaaaggttgtcaagatt
gtgaatgaagtttatcacttacacaataaacaccagtatccatttgttgtccttaacatt
ggggtagattctgagtgtgttgacatcaatgttactcctgacaaaaggcaaattttactt
caggaggaaaagtttttattagcaattctgaagacttctctgatggagatgtttggtagt
gatgttaacaaactaaatgtcaatcagaaacttctggacattgcaggtaacttgaagaag
acaattcctgaagagacagaaaagcctcaggcagaaatactgtctgactctgagactgaa
agtccaagtggtgaaggcaaaagaataatgactcttgccagattaagggagtcattctct
ctacatcaagcaacagaaagtaattttaaaagctctaaaaaggtaaaacagcagcaccat
tctccaagacaaaggttacttggtacccctgggagtactgtaaagattcaaaaggctgtc
ttgcctaaggaggctgagacttgtcagaagtttgactcaaaagtgtcagttccaaggaga
cacttgagaaaattagaagatactgcagattctggatcctgtagcatttctgaatcagat
gctggatgtagtacaccagaagctgtaagctgcatcaatagtgaaagtgcagttaattct
gaagaagaattctgtagcacagaagaacagatggagaaggaatgtcttaaaactgctgaa
tgtagtaagaagtcattggacaatgatgttcaggtcttgggcactgaacccaagctagat
caagtgaatgactggactgatcaaaacaagttctctcaagaagccaataattgttcccca
agagtaaaacgttttaaaagcagaaactttaagagtgaagcagatgattccaaggcaggt
aaatatcctgaagtggagaacactagtgttgatgtactggtggaagttaaaaagaaaatt
gtgcctcttgaattctctatgaaggttttggcagaaaaggtaaaaaaggtaatacagcaa
caacagaaaaatgcagacactgaaaactacagaagatttaaagcaaaaattagtcctggg
gagaataaagtagcagaagatgaattaagaaaagagatcagtaaagaaatgtttgcaaaa
atggaaatcattggccagttcaatttagggtttataatagcaaagttgaattctgatctt
ttcataattgaccaacatgctactgatgagaaatacaactttgagatgttgcaacaacac
actgttctccaacctcagaagctgatagtgcctcaaaatctcaatttaacagcagtaaat
gaaactgtattgattgaaaacctcgaaatattccgaaaaaatggctttgattttgtcata
aatgaaaatgctcccgtaactcaaagagttaaattggtgtcattgccaacaagcaaaaac
tggacttttggtccacaagacatagatgagctgatcttcatgttgagtgactgccctgga
gtgatgtgcaggccctcgagggtcagacagatgtttgcttctcaagcttgcaggaagtct
gtgatgattggaactgcactgaatgtgcaggaaatgagaaaactgatcacccatatgggt
gagattgagcatccctggaactgcccccatggaaggcctactatgagacacatagtcagt
ttagatctgatttcaccagaataa
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