Ficedula albicollis (collared flycatcher): 101821067
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Entry
101821067 CDS
T02815
Symbol
VPS39
Name
(RefSeq) VPS39, HOPS complex subunit
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04140
Autophagy - animal
fab04148
Efferocytosis
fab05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101821067 (VPS39)
04148 Efferocytosis
101821067 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101821067 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101821067 (VPS39)
Membrane trafficking [BR:
fab04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101821067 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
EcoR124_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
101821067
NCBI-ProteinID:
XP_016154034
LinkDB
All DBs
Position
5:complement(26791313..26812817)
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AA seq
835 aa
AA seq
DB search
MSSESVCCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTI
SKAKGASLFTCDLQQSDSGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMA
WCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNE
EGVCTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG
TNIIYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNL
FAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEK
AHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHT
NVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANS
PLKGHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLNF
LIENFKSLTIPYLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLSSFPADRAPVPAG
EEGGDLGDYRKKLLLFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVH
ILKDTNMAENYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAA
LQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLR
VQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaaagtgtctgttgcaataggtttgaagtgacgctggagaaatccaacaag
aacttctcaaagaagattcagcagatccatgttgtttctcagttcaaaattttggtcagt
ctattagaaaataacatttacgtccacgacctgttgacatttcaacaaatcaccacaatt
tcaaaggcaaaaggtgcatctctcttcacttgtgatctccagcaatcagattcaggggaa
gaggtgctgaggatgtgtgtggcagtgcgtaagaagctgcagctttatttctggaaggac
agagagttccatgagctacagggggacttcagtgtacctgatgtacccaagtctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggctccatcaaagagctgtttcccacagggaagcagctggaaccactggtagct
cctgtagcagatggaaaagttgcagttggccaagatgatctgactgttgttcttaatgaa
gagggggtctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccctacatcattgctgtgctgccaaggtacgtggagatccgcactttcgag
ccccggctgctggtgcagagcatcgagctgcagaggccacgcttcatcacctctggaggc
acaaacattatatatgtggcaagtaatcactttgtttggaggctcattccggtgtccata
gccacacagatccagcagcttctgcaggacaaacagtttgagttggctttgcagttggca
gaaatgaaagatgattcagatagtgagaagcgacaacaaattcaccacataaagaacctt
tttgccttcaaccttttctgccagaagcgttttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattac
aggaaacagctacagtatcccaaccccctgccagggctttctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaaaggagtcagctagtgaagaagcta
aatgattctgatcatcagtccagtacctcacccctcatggaaggaacacccacaatcaaa
tccaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctgcataca
aatgtagcactggtggcaccactgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaaatacagtgagctgataatactgtatgagaaa
aaaggtctgcatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactcg
cctttgaagggtcatgagaggacagtgcagtatctgcagcatttgggcacagagaacttg
cacttggtattttcctactctgtctgggtgctaagagattttcctgaagatggtctgaag
atatttacagaagacctccctgaagtagaagctttgccacgagacaaagtgctcaatttc
ttgatagaaaattttaaaagcttgactattccttacctggaacacatcattcatgtctgg
gaagaaaccggtgcagacttccacaattgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagaatatctcagttctttccctgcagatagagctccagtgcctgctggg
gaggaaggaggagacttgggggattaccggaaaaagctgcttctttttctggagaagtct
agctggtatgaacctagtcgacttattagtgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttgggtcgaatggggaaacatgagcaagctctatttatttatgttcat
attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa
gatggcaacaaagatgtgtatctgtccctgctccgcatgtatctctccccacccagtgtt
cattgcctgggacccatcaagatggaggtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggaactgcaccacagcaaactggataccactaaggcaataaacctactc
ccagcaaatacccagattagtgagattcgcatcttcttagagaaagtacttgaagaaaat
gctcagaagaaaagatttaatcaagtgctcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcggatcttgcatcagcaagtcaagtgtattattacagaggagaaggtg
tgcactgtttgtaaaaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcaacacactggacacttga
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