Ficedula albicollis (collared flycatcher): 101821098
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Entry
101821098 CDS
T02815
Symbol
PCDH20
Name
(RefSeq) protocadherin 20
KO
K16498
protocadherin delta 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101821098 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
fab01009
]
101821098 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
fab04515
]
101821098 (PCDH20)
Protein phosphatases and associated proteins [BR:
fab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101821098 (PCDH20)
Cell adhesion molecules [BR:
fab04515
]
Cadherins
Protocadherins
101821098 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
101821098
NCBI-ProteinID:
XP_005037992
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All DBs
Position
1:58733147..58737743
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AA seq
904 aa
AA seq
DB search
PRGSLQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPTAGGQH
PSSLQPPLSFTLASHGLGGQYVQLDNRSGELHTSAVEIDREALCVESSGAAILGGSAAVS
SSSPSPESCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHIRLSVPENAPVNTR
LAIEHPALDPDMGTNGVQTYRLRDNYGVFTLDVEENENGERTPYLIVMGALDRETQDEYV
TVIVAEDGGTPPLVGSATLTIGISDINDNCPQFNDSQLNVTLYGNSSLGTHVATVHAVDM
DLGSNAQITYSYSQKVPQPSRDLFHLNESTGIITLSTKADGDTPKLHRLIILGNGPGCIP
AVITVLVTIIKVMMRPPEVVPRFIANEVEGVVFLKELEPINTPIAFFTIKDPDEKYKVSC
YLDGDGPFGLSPYKPYNNEYLLETTKPLDFETQQLYEISVVAWNSEGFHVKKVVKIQILD
DNDNSPVFSEELIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGPDAPSYFALDKT
TGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFF
VPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKISLDREQQSS
YVLWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEV
YAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDH
GYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISVEEKQPQISIEPTHKKMESASCM
PTLVALSVISLSSIALVTGMGIYICLRKGKKHHRADENLEVQIPLNGRINLHMLEKKPME
ISNI
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
ccccgcggcagcctgcagcacttgctcctctttctgctcttcgttgggcctttcaactgc
tttgccagttacagccgcgccactgagctcttctacagcctcaacgaggggctgcctgct
ggggtgctcatcggcagcctggcccgtgacctgcggctcccaacggctggtggccagcac
ccttcatctctgcagcccccactctccttcaccctggcctcccatggcttggggggacag
tatgtgcagctggacaaccgctctggagagctgcacacctcagctgtggagatagaccgg
gaagcactatgcgtggaaagcagtggggccgccatcttagggggatcagctgctgtctcc
tcttcctccccctcaccagagtcatgcctgctgctgctggatgtgctggtcctgccacag
gagtactttcgcctggtgaaggtaaaaattgctatccgtgatgtcaacgacaacgcgccc
cgcttccctgtgccccacatccgtctctcggtgcctgagaacgcccctgtgaacacgcgc
ctggccatcgagcaccccgcccttgaccccgacatgggcaccaatggtgtgcagacctac
cgcctgcgagataactacggggtcttcaccctggatgtggaggagaacgagaacggggag
aggactccctacctgatcgttatgggggcactggacagggagacacaggatgagtatgtc
acagtcatcgtcgctgaggatggggggactcctccgctcgtcggcagtgccaccctcact
attggcatcagcgacatcaatgacaactgcccccagttcaacgactcgcagctcaacgtc
accctatatgggaattccagcctagggacacacgtggctactgtccacgcggtggacatg
gaccttggatccaatgcccagatcacctactcctacagccagaaggtcccccagccatct
agagacttgtttcatctgaatgaaagcacaggaatcatcacactctccactaaagctgat
ggggacactccaaagctgcacaggctgatcatactgggcaacggtcctggctgtattcct
gctgtgatcacggtgctggtgaccatcatcaaagtcatgatgaggccacctgaagttgtt
cctcgttttatagctaatgaagtggaaggcgtggtcttcttaaaggaacttgagcctatc
aacacacctatagctttttttaccatcaaagaccccgatgaaaagtacaaagtcagttgc
tatttggatggtgatgggcctttcggactttctccatacaagccgtacaacaatgaatac
ctgctggagaccacaaagcctttggactttgaaacacagcagctgtatgaaatctccgta
gttgcatggaactcagaaggatttcatgtcaagaaagttgtcaaaatacagattctggat
gacaacgacaattcaccagttttctctgaagaactgatagaattgtccattgaggagaac
aatgttcccaatgcttttttgaccaaactgcatgctactgatgctgacagcggagaaaga
gggcaagtgtcctatttcttaggtcctgatgccccttcctattttgctttagataaaacc
acaggagttcttacagtttccacccaattggatagagaagaaaaagagaaatacagatac
actgtcaaagcagtagattctggattccctccaagagaatcaatagcaactgtcaccatc
actgtattggataaaaatgataacagtccaagatttatcaataaggatttcagctttttt
gtgccagaaaactttccaggttttggtgaaattggagttataagtgtcacagatgctgat
gcagggcaaaatggatgggttgccctttcagttctgaatggaagtgatatttttgttata
gatactggaaaaggagttttgagagctaaaatctccctggacagggaacagcaaagctcc
tatgttctttggattgaagcagttgatggtggtgatcctgccctgtcttctacagcaaaa
ataactatccttcttctggacataaatgacaaccctcctttggtcttgtttcctcagtct
aatatgtcttacttgttagtccttccttctacccttcctggctctcccatcactgaggtc
tatgctgttgataaggacactggcatgaatgcagtcatagcttacagtatcataggaaga
agaggccctcgacccgagtcatttcggattgaccccaaaactggtaatatcaccttggaa
gagtcactgatgcaaaatgactatggcctctatcggctgctcgtaaaagtgagtgatcac
ggctacccagaacctctccattccactgtcatggtgaaccttttcgtcaatgataccgtc
agcaacgagagctacatcgaaagtttgttaaggaaggagcctgatatcagtgtagaagaa
aagcagccacaaatatccatagagcctacacataaaaaaatggagtcagcatcctgcatg
cctaccttggtagctctttcagtaataagcttgagttcaattgctttagtgacagggatg
ggtatttacatttgtctaagaaaagggaaaaagcatcacagagcagatgaaaacttggaa
gtacaaatcccattaaatggaagaattaacttgcacatgctggagaagaaaccaatggag
atttctaacatttga
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