Ficedula albicollis (collared flycatcher): 101821474
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Entry
101821474 CDS
T02815
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03440
Homologous recombination
fab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101821474 (PALB2)
03460 Fanconi anemia pathway
101821474 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101821474 (PALB2)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
101821474 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
101821474 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
101821474
NCBI-ProteinID:
XP_016157264
LinkDB
All DBs
Position
14:7903816..7912603
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AA seq
1517 aa
AA seq
DB search
MFWLPHSTDCRLTLLPEACGENGRSRPRADKEKLREKLALLRREYSETVIRLRRARRAER
ARSHGRRERSPPGGSHGERDAPGRRWWDRNAPGENWWDWDVPVGATGSAPGQRDGSTRRS
LLSLSAPAHCPAEEAPGPADPHSGPHCPHTHTQPLPWAEPWSAVTSALLPSSPGLQCSGP
HCSRDNTSLSADRGGPSQLQTKTCSEADTEKTTSVTVKHVPEFSSDEVSPQDSSRAESFQ
ASQENIRPVPVEKKPKTSQGMMKLRRRTKVVESKEREPVHDVHLISAGEILKNQIASAEE
LQSPVFRHSSLSHTEEPAQRAPGALLVQGEGNNFTPDTPSGLVQGVFEGSATAQEPEPSP
HALKDSRAIWQPESSGAVATPDRCEPCYQQGHSVLLDPRGYGGKESPSIIKQPEGQSLYE
DQGELHGLLDLMSENEILLNSRNNTITKGSKNHEGDQSNTSTLNPCPADNALDNAEPQQA
EVQSRLSPPEKAAAPEGMLSSCTVVEGLLFPVEYYIRTTRRMSNCQRKVDLDAVILSQLG
RSKKGQRSKCKQKDANPNKPLQERTEGDLEPGVVPFPFLGAENDQANSSNSQKSLPASGS
SSSSSCSSTSLKSISQKSIPSIRQEQRQSQRKQKGRRKSACKASMHPASQDLIESQDHTM
AKGSSALLSNENQSEKENCDANLERSSSDEGRLCGAAALASAGTGVTGATQPEGPGPALD
GSQVPGKCHKALVEQVINPLHSSDSLSPGSDTSASGVGDGEASAPVCQGDKHPVQRVRRQ
RGARGAGQLPGVSVPVRRSVRCSARHRAQAGSPDGSSRRHSCPMGSQGPAALGLPPLDPD
TRGSLFSFRSLQWLVPQLGIRDFHLPNEEFGVLKLEKLNSSPVNDLEDFVSGDGVAPEDT
PDAQMKPKYKGLRSNLILPSKTGLPELPCVGNPASKKELSTHELLFTPMGTVLAKTPTHP
ESQISSSIFPAVGATPGVLPSVRSEVTVSNTPVPASATPPSPRGATALVLGDVAFRDPAV
PLHPDSCAAGAAPNQEEQGTTFPSAAERGPEKKSDETVSLEKHRQSENKEQESCRASPEE
KKDVAEQLTPVLLDGPGEESLQFVSELKDSSCSCAVDVSTVWWAAAGRRELRVVTASESA
VSLWQPLAPDCWGKVYTWHLREIPVIQIVPLPDTCNLVCVALGELEIGEIRLLHYSSETD
SFEHSLVKTGNIKAVVGLKDQRLVSSSRTMQEQQVEMVSLSETGGSPFRSKDRQTLMPPE
ETVTAFAEVEGMREALVGTTAGNSVVVWNLKTGQLLRKMHVGYSYPASICHRAYSDSGLL
FVVLSHPHAKESESCGSPAFRVVAFNPRTGRSAGVMFCCLPPGPAGRRVPGTGLGWAGLG
WLLWGFGKAPGEQGSPGRDPVLVIRGCIQIRPSRVSGVWAGGWGCFLPTSHTGLCADPEP
WHRHHGDTGLCLCPPGTGPCVPGLLGSAPGAACGCSSPCCQVCVCAAAGCRHVAFSFPCP
VLRQQQDQPCSVLTQEM
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgttctggctgccgcacagcacagactgccggctcaccttgttaccggaggcctgcggg
gagaacgggcggtcacgcccccgcgccgacaaggagaagctgcgggagaagctggcgctg
ctgaggcgggagtacagcgagaccgtcatccggctgcggcgggcacggcgagctgagcga
gccaggagccacggccggcgggagaggagccccccaggtgggagccacggggaacgggat
gccccaggtaggagatggtgggaccggaatgccccaggtgagaattggtgggactgggat
gtcccagtaggagccacgggcagtgccccgggacagcgtgatgggagcacccggcggtca
ctgctgtccctcagtgcccctgcacactgtcctgccgaggaggctcctggccctgctgac
cctcactccgggccccactgcccacacacccacacacagcccttgccctgggctgagcca
tggtctgcagtaacttctgctctgcttccctcctcaccaggtctgcagtgctccggccct
cactgttccagagataacacatctctcagtgctgacagaggtgggccctctcagttacag
acaaaaacctgctctgaggctgacactgagaagacaacgtctgtcacagttaagcatgtt
ccagaattctccagtgatgaggtcagcccacaggacagctcccgggcagaaagctttcag
gccagccaggaaaacatcaggcctgtccctgtggagaaaaagcccaaaacctcccaaggc
atgatgaagctgcggagacgaacgaaggttgtggaatcaaaagaaagggaaccagtgcat
gatgtgcatctgatcagtgctggtgaaatactgaaaaatcaaattgccagtgcagaggag
cttcaatcaccagtgttcaggcacagcagcctctcacacaccgaggaacccgctcaaagg
gcacctggggcactgcttgtgcagggagaaggaaataatttcactcctgatacaccatca
gggcttgtacagggtgtgtttgagggcagtgccactgcacaagagcctgagccatcccca
catgcactgaaggacagcagggccatctggcagcctgagtcctcaggggctgtggccaca
cctgatagatgtgagccgtgttatcagcaaggacactctgttttacttgacccccgaggc
tatggtggaaaagaatcccccagtataataaagcagccagaaggtcagagtttgtatgaa
gatcagggagaattacatgggctcctggatttaatgtcagaaaatgaaatactgcttaac
agcagaaataacaccataaccaaggggagcaaaaaccatgaaggagatcaaagtaacact
agcaccttaaatccctgtcctgcggataatgctctggacaatgctgaacctcaacaggct
gaggttcagtcaaggctctctccccctgagaaggcagcagctcctgagggcatgctgagc
tcctgcacagtggttgaggggctgctcttccccgtcgagtactacatccgcacaactcgc
cgcatgtccaattgccagaggaaggtggacctggatgctgtaatcctcagccagctgggc
aggagcaagaaaggtcagcggagtaaatgcaagcagaaagatgcaaaccccaataagccc
ttgcaagagagaactgagggtgatttggagcctggggttgtgcccttcccttttcttggg
gcagaaaatgatcaagcaaactcaagtaattctcagaaatctcttcctgcatctggcagc
agcagcagcagcagctgcagcagcacttctcttaaatccatttctcagaaaagcattcct
agcataaggcaggagcagagacagtcccagaggaaacagaagggaagaagaaagtctgct
tgcaaagcctccatgcatccagcatcacaagatcttatagagagtcaggatcacacaatg
gccaaaggaagcagtgcactgttgtcaaatgagaaccagagtgaaaaggaaaactgtgat
gctaaccttgaaaggtcatcctcagatgaggggagattgtgtggtgctgcagcactggca
tctgcagggacaggagtgactggagctacacagccagagggtcctggccctgctctggat
gggagccaagtgccaggcaaatgccataaggctctggtagagcaggttataaaccccctc
cacagcagtgattctctgagcccagggagtgacacttctgccagcggtgtgggagatggg
gaagccagcgctcctgtgtgtcagggagacaaacatccagtgcagcgtgtgaggaggcag
cgaggagcccgtggggctgggcagctccccggggtcagtgtccctgtgcgccgctccgtg
cgctgctctgcgagacacagggcccaggcaggctcaccagatggcagcagcagaagacac
agctgtcccatgggttcgcagggtcctgctgcccttgggctccctcctttggaccctgac
actcgtggctccctcttctcctttcgcagcctgcagtggctggtccctcagctgggcatc
agggacttccacttaccaaatgaggaatttggagtactgaaactggagaaattgaattct
tcccctgtgaatgacttggaggattttgtgtctggggatggtgtggctccagaggacaca
ccagatgcacaaatgaagccaaaatataaaggtctcagaagtaatttgattttgccttcc
aaaactggattgcctgaactcccttgcgtgggaaacccggcgtccaagaaggagctttcc
acccatgaattgctattcactcccatggggactgtcttagctaagactcccactcaccct
gagtctcagatttcctcatccattttccctgctgtgggcgcaaccccaggtgttttacct
tcagtgcgcagtgaggtcacagtgagtaacacacctgtacctgcttcagcgactccacct
tcccccagaggagcaactgccctggtcctgggggatgtggcattcagagaccctgctgtg
ccactgcaccccgacagctgtgctgcaggggctgccccaaaccaggaggagcaaggtaca
acatttccttcagcagctgaaagaggtcctgagaagaaatctgatgagactgtgtccttg
gagaagcatcggcagtcagaaaacaaagagcaggagtcctgcagagcttcacctgaggag
aaaaaagatgtagcagaacagttgactccagtgctgctggatggccccggagaagagagc
ttgcagtttgtgtcagagctaaaggattcctcatgttcatgtgctgtggatgtgagcacg
gtgtggtgggcagcagctggccgcagggagctgcgagtggtcactgcctccgagagcgcc
gtgtccctctggcagcccctggcacccgactgctggggcaaggtctacacctggcacctg
agagagattcctgtaatccagattgttcctctgccagacacctgtaaccttgtatgtgta
gcactgggagagctggagattggagaaataaggctcttgcattattcttctgagactgac
tcatttgagcactccctagtgaaaactgggaatataaaagcagttgttggactgaaggac
cagaggctggtgagcagcagcaggaccatgcaggagcagcaagtggagatggtttcactc
tcagagacaggggggtctcccttcaggagcaaggacaggcagactctgatgccccctgaa
gaaactgttacagcctttgctgaagtagaagggatgagagaggccttggtgggcaccact
gcagggaacagcgttgtggtttggaatctaaaaacaggtcagctcctgaggaagatgcat
gttggttattcatacccagcttccatctgccatcgagcatattctgactctggccttttg
tttgttgttttaagccatcctcatgccaaagagagcgagtcctgtggcagcccagcattc
cgtgtggtggccttcaacccccgcacgggccggagcgcaggggtgatgttctgctgcctc
ccccctggccctgcaggcaggcgagtccctgggactgggctgggctgggctgggctgggc
tggctcctctggggctttgggaaagcccctggagagcagggcagccctggcagggatcca
gtcctggtgataaggggctgcatccagatccggccgagccgcgtgtccggtgtgtgggct
gggggctggggctgcttcctgcccacttcccacactgggctgtgtgctgaccctgagccc
tggcaccgtcaccacggggacacgggcctctgcctttgtcccccagggactgggccgtgt
gtccctgggctcctgggctcagcccctggcgctgcctgcggctgcagcagtccgtgctgc
caggtttgtgtgtgtgcagcagctggctgcaggcacgtggccttttccttcccatgtcct
gttttgaggcagcagcaggatcagccttgcagtgtccttacacaggaaatgtga
DBGET
integrated database retrieval system
