Ficedula albicollis (collared flycatcher): 101821524
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Entry
101821524 CDS
T02815
Symbol
SH3TC1
Name
(RefSeq) SH3 domain and tetratricopeptide repeats 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101821524 (SH3TC1)
Membrane trafficking [BR:
fab04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
101821524 (SH3TC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
ARM_TT21_4th
TPR_10
TPR_2
SH3_1
ARM_TT21
TPR_1
SH3_2
TPR_NPHP3
Csd3_N
Motif
Other DBs
NCBI-GeneID:
101821524
NCBI-ProteinID:
XP_005045539
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All DBs
Position
4:61252388..61281759
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AA seq
1330 aa
AA seq
DB search
MESLAVAGGTSMLSMNTVVPALEGEQDRNLEREETEQGMCGCDCKHVESNAAISTPRDAA
GMDTLQEQTECSPSEKCMNVSSRTFPSQAENFPTDISLKLTMVKRKSGCPDPKLQRQLRG
QLRLLENDSKEVMTVFSELSARLLSIHSDQDLIVVTFKTFEEIWKFLTYHSLGFINHCME
NLFLDQSFWLYSQEEEDTGIEVCINEKSLNLMYRSLLVQEGSFFVLYPDNTIRKMTVTDS
ETTFEAGAFTEDVTSGSVDSDRPLWSNASLEPLEPFHQWFLKGYSNPIDFSYKNESKSIK
KVAMGSCLAVMNYESVVLEELSFQEGDKIEILGYFIECMEWFLGRHVFTGQIGFVKTGHV
QLDLSKNKPQDLDFLEVEELLFFSKEKNFEEVVHLLKKTSITDVCSVYRIDELEEPEFQK
AHECEIPHSPSSPGSTSKNGKIEELLKNFKNLEATQAEDAAAERKESAGSSKTEILPLPE
GPCFHICQEDIQASDIFEPLLLFLNRKEYESNFKSLYDLSYSFTNSMFYGFSEEEELVSF
LSLAREAAKKAGLSWALARLCFLLGRLSVKKLKFSQARVYFEEALRAVAGEFSDLYFVIV
LYTNLTVIYLTQKNKEKCTHIFDKAASLLMGIPNYICSADLESDILKYALKRTVLSQNKH
AEARACFLLAKHYSARKQHQEALPFLERFQLLLNDLGLQKSLSNNCYFKLAESYHEKCLP
HIVLSCIKVTSPQSSSTLTDSLKRIYLVIKNAPKLYGLRKARQVFPSQIAPYLIQALSSV
FTDEEEGLCSTIYLSLAKLYSHHKQYRKAIAYMMKALDSASAKPEETINYLVSLAWLYIL
YKQYDVALAILNAVVGSAWSNPQQLGIVYNMLAIALKRTNNTKAAAESYYKALCLSEETE
TTHNQAIALANFGALCLHAAASKLAEHYFIRAVKLFSKLPFMDCGQDFIQVLLQLGCYYV
GGTEREKGRFYYEWALLVAMETSHLESQLQAIKLLCQFYSTVAPNETQCVIYNEYQLSLA
RKMSNKVLEGQILETISQLYLSLGTERAYRAALEYTKRSLGIFIDLQKKEKEAYAWLRAG
KIYYVLRQNELVDLYIQVAQDAALCTGDPNLGMELFEAAGDIFFNGTWEKEKAVTFYRDR
ALPFAVQTGNKTTELRLCNKLVELLMNLKAYEESLEYARVALVLSVNLGNQLNERIAYHR
LAAIHHHLGHCELAEHFYLKALSLCSSPLEFEEETLYYVKVYLILGDIIFYDLKDPFDAA
GYYHLALAAAMDLGNKRAQLKIYTRLAVIYHNFLVDREMSLFFYQKARTFAAELNVRRIN
LAPDQCYKCS
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggagagtttggcagtggcaggtggtacatctatgctcagcatgaacaccgttgtccct
gctctggagggagagcaagacaggaacttggagagggaagaaacagagcagggaatgtgt
gggtgtgactgcaaacatgtggagagcaatgctgccatcagcactcccagggatgcagct
gggatggacacattgcaagaacaaacagaatgttctccaagtgaaaaatgcatgaatgtc
agttcaaggacctttcccagtcaggcagagaattttccaactgatatctccttgaagtta
acaatggtaaaaagaaagagtggatgtcctgatcccaagctccaaagacagctcagaggg
cagctccgacttctggaaaatgacagcaaggaggtgatgactgtcttcagtgagctttct
gccagactcctgtctattcacagtgatcaagatttaattgtggtgacatttaaaactttt
gaagaaatatggaagtttctaacctaccactcactgggttttataaatcattgcatggag
aatttattcctagaccagtctttctggctatattcccaagaggaggaagacacaggcatt
gaagtctgtataaatgaaaaatcgttaaatttgatgtacagaagtctgctagtacaggaa
ggatctttttttgttttatatcctgataatacaatacgaaagatgacagttacagatagt
gaaacaacttttgaagctggggcatttactgaagatgtaacaagtggatctgtggatagt
gacaggcccttgtggtctaatgcttctctggagccattggagcctttccatcaatggttt
cttaaagggtactctaatcccattgatttttcctataaaaatgaatccaaatctatcaaa
aaagttgcaatgggatcctgtttagcagtgatgaattatgaaagtgttgtgttggaagag
ctgagtttccaggaaggggacaaaatcgagatccttggttacttcattgaatgcatggaa
tggtttcttggaagacatgtgtttactggccaaataggttttgtaaagacaggtcatgtt
caactggacttatctaaaaataaaccacaagatctggattttcttgaagtagaagagtta
ttatttttttcaaaagaaaaaaatttcgaagaagtagtgcatttgttgaaaaagacctcc
atcacagatgtttgttctgtctatagaatagatgaattagaagaacctgaatttcagaaa
gcccatgaatgtgaaatcccacactcaccttctagcccaggatccactagcaagaatggc
aagatagaagaattgctgaagaacttcaagaatttggaggccactcaagctgaagatgca
gctgctgaaaggaaggaatctgctggctcttcaaagactgaaatattgcctctacctgaa
gggccctgtttccacatatgtcaggaagatattcaagcatctgacatctttgagccattg
ttactcttcttaaataggaaagagtatgagagcaacttcaaaagcctgtatgatttatct
tattcatttaccaatagcatgttttatggattttcagaagaagaagaactggttagtttt
ttaagtttagcaagggaagcagcaaagaaagcaggcctgtcctgggcactagcaaggctg
tgctttctcttaggcaggctcagtgtcaaaaagctgaagttttcccaagctcgggtgtat
tttgaggaggcattgagagcagtagctggagagtttagtgatttgtactttgtgattgtt
ctttatacaaatctaacagtcatctacttgacccagaagaacaaagaaaagtgtactcat
atctttgacaaggctgcatctcttctgatgggaattcccaactatatttgcagtgctgac
ctggagtcagacatactgaagtatgctctgaagaggacagttctgagccagaacaaacat
gcagaggcaagggcatgctttttgctggcaaaacactacagtgcacgcaaacaacaccaa
gaggcactgccgttcttggaaaggtttcagctcttgctcaatgacctgggtttacaaaag
agtttatccaacaactgttacttcaaactggcagagtcctaccacgaaaagtgtttgcca
cacattgtattaagttgcataaaggttacctctccccagagctccagtaccttaacagat
tctctgaaaaggatttatttagtcatcaaaaatgctcccaaactatatggcctgagaaaa
gccagacaagtattcccatcccaaattgcaccttacctcatacaagcactttcttctgtg
tttactgatgaggaggaaggactgtgcagcactatctatctcagcttagcaaagctgtac
agccaccacaaacagtacagaaaagccattgcttacatgatgaaagcactggactctgct
tctgctaagccagaggaaaccatcaactatttagtttcacttgcttggctatacattctt
tacaagcaatatgatgtggctttagccattttaaatgctgttgtaggctctgcatggagc
aatcctcagcaactcggcattgtctataacatgcttgccattgctttgaaaaggacaaac
aacaccaaagcagctgctgagagctactacaaagcactgtgtctgtcagaagagactgag
acaacccataaccaagccatagccctggctaattttggggcactctgcctgcatgcagca
gccagcaagctggcagaacattattttatcagggcagttaagctattctccaagcttcca
tttatggattgtggtcaagactttatccaagtcctccttcagctgggatgttattatgtt
ggtggaactgaaagagagaaaggaaggttttactatgaatgggctcttttagttgcaatg
gagacaagtcatctggagagtcaactacaagcaattaaactgctgtgtcagttctacagt
acagttgctcccaatgagactcagtgtgtcatctacaatgaatatcaactatctttagcc
agaaagatgtccaacaaagttctggagggacaaattttggaaaccattagtcagctttat
ttgtctttaggaacagaaagggcctacagggcagctctggaatataccaaaagaagcctt
ggaatatttatagatctccagaaaaaagagaaagaggcatatgcttggctccgggcagga
aaaatatattatgttctgaggcagaatgagcttgtggatctctatattcaggttgctcag
gatgctgctctttgcacaggagatccaaatttaggaatggaattgtttgaagctgctgga
gacatatttttcaatggtacttgggaaaaggagaaagcagtgactttctacagggacagg
gctctcccatttgctgttcagactggcaacaaaaccactgaactcagattatgcaataaa
ttggtggaattgctgatgaatctgaaggcttatgaggaaagtctggaatatgcgagagta
gcccttgtcctcagcgtaaatttaggaaatcagctaaatgaaagaatagcttaccatcgc
ctggcagccatccatcaccatttgggtcactgtgaactagctgaacacttctatttaaag
gccttgtccctctgttcctctcctctggagtttgaggaggaaacactctattatgtcaag
gtgtacttgattttaggagacatcatattctatgacctgaaggatccctttgatgcagct
ggctattaccacttggctctcgctgctgccatggacctgggcaataaaagagctcaactg
aagatttacaccagacttgctgtgatctaccataacttcctcgtggatcgggaaatgtct
ctcttcttctaccaaaaggcaagaacctttgcagcagagctgaatgtaaggagaataaat
ttagctcctgatcagtgttacaagtgttcataa
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