Ficedula albicollis (collared flycatcher): 101821940
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Entry
101821940 CDS
T02815
Symbol
RPA1
Name
(RefSeq) replication protein A1
KO
K07466
replication factor A1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03030
DNA replication
fab03420
Nucleotide excision repair
fab03430
Mismatch repair
fab03440
Homologous recombination
fab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101821940 (RPA1)
03420 Nucleotide excision repair
101821940 (RPA1)
03430 Mismatch repair
101821940 (RPA1)
03440 Homologous recombination
101821940 (RPA1)
03460 Fanconi anemia pathway
101821940 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fab03000
]
101821940 (RPA1)
03032 DNA replication proteins [BR:
fab03032
]
101821940 (RPA1)
03400 DNA repair and recombination proteins [BR:
fab03400
]
101821940 (RPA1)
Transcription factors [BR:
fab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101821940 (RPA1)
DNA replication proteins [BR:
fab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101821940 (RPA1)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101821940 (RPA1)
MMR (mismatch excision repair)
101821940 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101821940 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
Motif
Other DBs
NCBI-GeneID:
101821940
NCBI-ProteinID:
XP_005056863
UniProt:
U3JVR7
LinkDB
All DBs
Position
19:6802062..6824969
Genome browser
AA seq
613 aa
AA seq
DB search
MSGRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSAWCICQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGSPQPYNEG
QGQRSAAPAGNPAPSKPQQQNGNLSGAGPAAPKYHAPSNQFEKASAPSALKTPGGSQAKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENKPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
TSISDVRGGPGAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDSAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTFEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcggctgagcgagggggccatcgcggccataatgcaaggggaggaggtgtcc
aagcccgtgctgcaagtcataaatacgcgggctattgccacgggaaccgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctttcctcattcatgttggcaacacag
ctgaactccctggtggaagaggagcgcttgtcagcctggtgtatctgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaatgtc
ctgcaaactgctgatcaggttggtgggcctattggcagtccccagccatacaatgaagga
caagggcaacgttctgcagctccagcaggaaacccagcacccagcaaacctcagcagcaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccatgctccctccaaccag
tttgaaaaagccagtgctcccagtgccctgaagacacctgggggttctcaggccaaagtg
gtgcccattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttttttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacaagcccaaagactcaattgttgatgtaattggaatttgcaag
agctatgaagatgtcactaaaattacggtgaaagctaacaatagagaggtttcaaagagg
aacgtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacggttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaatgt
acctccatctctgatgtgagaggtgggccaggagctggagcaaataccaactggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctcccag
gattgcaacaagaaagtgatagaccagcaaaatggactttaccgctgtgagaagtgtgac
cgagaattccccaacttcaaataccgcctgatgctcctggtgaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagactcagcagaattcattcttgggcaaaatgca
gctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaggtgttccaaaat
gcaaacttcaacaccttcgagttcaggatccgggtgaaactggagacttacaacgatgaa
tctcgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagcaag
aggttgattgccaacatcaggagaaatgctcagctggggtga
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