Ficedula albicollis (collared flycatcher): 101821977
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Entry
101821977 CDS
T02815
Symbol
DDX1
Name
(RefSeq) DEAD-box helicase 1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101821977 (DDX1)
03016 Transfer RNA biogenesis [BR:
fab03016
]
101821977 (DDX1)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101821977 (DDX1)
Spliceosome [BR:
fab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101821977 (DDX1)
Transfer RNA biogenesis [BR:
fab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101821977 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
101821977
NCBI-ProteinID:
XP_005044356
UniProt:
U3K215
LinkDB
All DBs
Position
3:104173873..104197016
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPEGSVVKSQHSGSAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLIATGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTITQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggccgccttctcggaaatgggtgttatgcctgagatagctcaagcagtagaggagatg
gactggcttctccctacagatatccaagcagaatccatcccgttgatcttgggaggtggt
gatgtacttatggctgctgaaaccgggagtgggaaaactggtgctttcagcattccagtt
atccagattgtttatgaaacactgaaggaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggggcagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcagatggtttgtgttgtcaaagcagagagataaaggaatggcat
ggatgcagagcaactagaggagtgactaaagggaagtactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatctgggaact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggagttcactatgcatgatacaattggatgttatctagacacagaaaaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
catataaggaaccaagcactttttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggatatgttggtctttgcaag
gctcctgagggtagtgttgtaaaatcacaacactcaggaagtgcacaggtggttcaagca
cagaaccttccaaatgctccaaaggcattgattgtagaaccgtcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgctaattattggtggagttgctgcaagagatcaactctcagtactggaacaaggtgtg
gatattgtcgttggaacccctggaaggctggatgacctgatcgcaacggggaagattaat
ttgtctcaagttagattcctggttctggatgaagctgatggccttctccttcaaggttat
tcagatttcataaacaggatccacagtcaaattcctcagataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactgcattcttttgatgtgaaaaaactgtcagag
aaaatcatgcattttcctacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccacgtagttgtgcctgtgaatccaaaagctgataaactctgggagcggctcggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacaagacctggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
atcaaagagcacaagatggatcaagccattattttctgcaggactaaaatagattgtgat
aatatggagcagtactttatccagcagggtggaggccctgataggaagggacatcaattc
tcatgtgtctgtctgcatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcacggtgttccatatgttatcaacgtgacactccctgatgaaaaacagaactatgtt
catcgaatcgggagagtcggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttacaac
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattacccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggcggtggactg
tataagggccatgtggatattctggcacccacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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