Ficedula albicollis (collared flycatcher): 101822019
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Entry
101822019 CDS
T02815
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101822019 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101822019 (SKIV2L2)
03041 Spliceosome [BR:
fab03041
]
101822019 (SKIV2L2)
03009 Ribosome biogenesis [BR:
fab03009
]
101822019 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
fab03016
]
101822019 (SKIV2L2)
Enzymes [BR:
fab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101822019 (SKIV2L2)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101822019 (SKIV2L2)
Spliceosome [BR:
fab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101822019 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
101822019 (SKIV2L2)
Ribosome biogenesis [BR:
fab03009
]
Eukaryotic type
Pre-60S particles
Helicases
101822019 (SKIV2L2)
Transfer RNA biogenesis [BR:
fab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101822019 (SKIV2L2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101822019
NCBI-ProteinID:
XP_005060686
UniProt:
U3K8J3
LinkDB
All DBs
Position
Z:17337841..17379413
Genome browser
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGPAEGARRPGKRLEEKPSIPAIVKPKREIEI
DSTENVVLGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGT
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVTAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccccgccgagggtgccaggaggccgggaaaa
cgattggaagaaaagccttcaataccagcaatagtaaagccaaaacgggaaattgagatt
gatagtactgaaaatgtcgttttgggaaaaaagccaaaattggaagatgttttatcagaa
gatgttaatttgacagatttgatgcctcaggtaaaggtgcagtctgtggaaactgttgaa
ggttgtacacatgaggttgcgcttccagcaaatgaagaattcactggtctgaagccaaga
actggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagctatt
ctttgtgtagataataaccagtctgtgttagtgtcagctcacacatcagctggtaaaact
gtttgtgctgaatatgcaattgccctggctttgagggagaagcagcgtgtgatatttact
agtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatcctacagcttcttgtttggtaatgaca
actgagatcttgagaagtatgctttacagaggctctgaggttatgcgtgaagtcgcatgg
gttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaagag
actattattttgcttcctgataacgtacactatgtgttcctttctgcaactattccaaat
gcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcgatgcaa
gtgcttagagatgcaggagacttagcaaaaggggatcagaaaggcaggaaaggaggaacg
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtaattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttccccttctg
aagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaactatagaa
atccttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtaattcttatggtggatgaaaaaatgagtccaacaattggc
aaacagcttttgaagggttcagctgatcccttaaacagtgcgttccacctgacatacaac
atggtattgaacttacttcgagtagaggaaattaaccctgaatatatgttggaaaaatca
ttttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtcattcccaatgaagaaaatgtggtgatatactacaga
atccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactcgtaaaggtgaagaatgaaggtgatgac
tatggatggggagtagttgttaatttctctaagaaatcaaatgttaagccaaattctggt
gaattggacccactgtatgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttttggtgcatcttgtcacagctatcagcagtgtccgactgtacatacctaaa
gacttgaggcctattgataacaggcagagtgtgttaaaatctgttcaggaagtacagaaa
cggtttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtactcacatcct
cttcacaatgatccaaacctggaaaccatatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagtagcaaagcgagaattgaagaaagccagaactgtcctgcaaatg
gatgaactcaaatgccgcaagcgtgttttgagaagactggggtttgccacgtcttcagat
gttattgagatgaagggacgggttgcttgtgaaatcagcagtgctgatgaactactcttg
acagaaatgatgttcaatggtctcttcaatgacttgtctgcagaacaggcaactgcacta
ctcagctgttttgtgtttcaagagaattccagtgaaatgccaaaattgacggagcagttg
gcgggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattctttcagacccaacctaatggat
gtggtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtc
tttgaaggtagcataattcgttgcatgaggcgtctagaagaactgctacggcagatgtgc
caggctgcaaaagccattgggaacactgaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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