Ficedula albicollis (collared flycatcher): 107604132
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Entry
107604132 CDS
T02815
Symbol
LSM1
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107604132 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
107604132 (LSM1)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107604132 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
107604132 (LSM1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
107604132
NCBI-ProteinID:
XP_016159017
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All DBs
Position
22:complement(5091282..5096866)
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AA seq
150 aa
AA seq
DB search
MAWGQGKSTEEMGHGHGQRGFRKEDWNPRGFLQKHLVLLRDGRTLIGFLRSIDQFANLVL
HQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQ
QAKQESEKLKVQALKERGLSVPRADTLDEY
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atggcctggggacaagggaagagcacagaggagatgggacatgggcacgggcagaggggc
ttcaggaaggaggactggaaccccagggggttccttcagaagcacctggtgctgctgcgg
gacggacggacgctgatcgggttcctgcgcagcatcgaccagttcgcaaacctggtgttg
caccagactgtggagcgcatccacgtgggcaagaagtatggggacatccctcggggcatc
ttcgtggtgaggggcgagaatgtggtgctgctgggggaaattgacctggagaaggagagc
gacacacctctgcagcaggtgtccatcgaggagatcctggaggagcagcgggtggagcag
caggccaagcaggagtcggagaagctgaaggtgcaggcgctgaaggagcggggcctgtcg
gtgccacgggcagacactctggatgagtactga
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