Ferroplasma acidarmanus: FACI_IFERC01G1016
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Entry
FACI_IFERC01G1016 CDS
T02713
Name
(GenBank) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
fac
Ferroplasma acidarmanus
Pathway
fac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FACI_IFERC01G1016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fac03019
]
FACI_IFERC01G1016
Messenger RNA biogenesis [BR:
fac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FACI_IFERC01G1016
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FACI_IFERC01G1016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_6
RRP40_S1
RRP4_S1
ECR1_N_2
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AGO60996
UniProt:
S0APY9
LinkDB
All DBs
Position
1002277..1002945
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AA seq
222 aa
AA seq
DB search
METKKIVYPGDKIEIAELKPRNGMYEYNSEFFSEYFGVIQESEKFIDVAPFNSPYLPRAN
DKIIGKIMDIGPTMWTVDINSPYYSLLHMNDTPWHVSSGDLERYLNVGDYIYARISVSNE
IKESWISLRDNGMRKLESGRIISVKPPKVPRVIGRGGNMINIIKNYTDTKIIVGQNGFIW
LDGNVDNVKKAIDAIRLVEKEAHTIGLTDRMEEYLKNMKGEN
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
ttggaaacaaaaaaaatagtttatccgggggacaaaatagaaatagctgaattgaaaccc
cgaaatggcatgtatgaatataattcggaattcttctctgaatactttggagtaattcag
gaaagcgagaaatttattgacgttgctccatttaatagtccatatttgccaagggcaaac
gacaagataatagggaaaataatggatataggtcccactatgtggacagttgatattaac
tctccatattattccctattgcatatgaacgatactccctggcatgtttcatccggggac
ctcgagcgttatctgaacgtgggcgattatatatacgccagaatatcggtatccaacgaa
attaaggaaagctggatttcgttaagggataatggaatgagaaagcttgagtcaggcagg
ataatatcggtaaagcctccgaaggttccacgtgttatcgggagaggaggaaatatgata
aatatcattaaaaactataccgatacaaaaataattgtaggccagaatggatttatatgg
ctcgatggcaatgtagataatgttaaaaaagccatagatgcaataaggcttgtggaaaaa
gaagcacatacaataggattaacagaccggatggaagaatacctcaagaatatgaaaggt
gaaaattga
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