Francisella adeliensis: CDH04_01985
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Entry
CDH04_01985 CDS
T06148
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fad
Francisella adeliensis
Pathway
fad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDH04_01985 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fad03021
]
CDH04_01985 (rpoC)
03400 DNA repair and recombination proteins [BR:
fad03400
]
CDH04_01985 (rpoC)
Enzymes [BR:
fad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDH04_01985 (rpoC)
Transcription machinery [BR:
fad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDH04_01985 (rpoC)
DNA repair and recombination proteins [BR:
fad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDH04_01985 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Minor_capsid_1
Motif
Other DBs
NCBI-ProteinID:
AXA33262
UniProt:
A0A2Z4XXS9
LinkDB
All DBs
Position
395448..399701
Genome browser
AA seq
1417 aa
AA seq
DB search
MNNGILQQDYNGKKFDIIKISLASPEVVRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPVKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEAAMGA
EAIRELLSETDIETEIETLQAEYEGSKSTAKREKAIKRIRLLETFLASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLRKLVDLNAPDIIVRNEKRMLQES
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLESRV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGAKGEGKLFASYDDVARAYNSGTI
EIHTKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLINILPDGISFSFINKVLAKKEIS
KVINQAFRVLGGKATVVLADKLMYAGFKYSTISGISVGVNDMTIPDIKEAKVEAAEEEIK
QVTEQYQSSLITENERYNNIINIWSKVSDEVGALMMDEISKDTITINGEKKDIESFNSVY
MMANSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVIIEEDCGTEDGLMFSAIVEDGEVKVPLAERALGRT
LAADVITEKGDVLLEAGTLLDENLVELLDDNAIDMIKLRSPISCNTRRGLCATCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGVTVSDIKVKTAGKIKHKNIR
TVTNKEGNEIVISRAGEIIVSDSMGRIREQHKIPMGASLPLKSGKAVEIGDVIATWDPHA
QPLITDVAGKIAMEDIIDGITSKHTYDDLTGQLTIEITSISQRTTAKNLKPVVNVVDEKG
EVIKSISLAIGAVLSVADDAMVDIGDVIAKIPLEGSKNKDITGGLPRVAELFEARRPKEA
AVLSPCDGTVRLGNRDTKEKQRIELLDKDGHLIDEILMHKSRHLVVFDGEKVVKGDVLAD
GPTDPHDLLKYRGLKAFADYIMFEAQSVYRMQGVVINDKHIETIVRQMMRKAKVLDQGDS
KFVKNEVAELVRIFEENDKLRSEDKKEVTFEPMLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDNLRGLKENVLIGRLIPTGTGLAVRKETDKIEKMREELGVDDNLLLSDVSS
SFGVSENSAEEAQVEEEKDINEDIEESLRNALESLDF
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacagcaagattacaatggtaaaaagtttgatataatcaaaata
tctttagcatcacctgaggtcgtaagatcatggtcacatggtgaagttaaaaaacctgaa
actattaactatagaacatttaagcctgaaagagatggtttattctgcgctaaaattttt
ggcccagtaaaagattatgaatgtctttgtggtaagtataaaagacttaagcatcgtggt
gtagtttgtgagcgttgtggcgtagaggtcgagcaagctaaagtgcgtagagagagaatg
ggtcatattgatctagtttgtcctgttgtacatatttggtacttaaaatccctaccatca
agaataggcctgtttttagatatgcctcttaaaaatgtagagaaagttctatattttgag
tcatatatagttacagatcctggtatgactccattagaaaagaaacaacttcttacagat
gatgagtatgctgaagctttagaaaactatggttatgaatttgaagcagcaatgggtgct
gaagcaatccgcgagctgttatcagaaactgacattgaaactgaaattgaaactttacaa
gcggaatatgaaggaagtaaatccactgctaaaagagaaaaagcaattaaaagaattaga
cttcttgagactttcttagcatctggtaataaacctgaatggatggtaatgacagtattg
cctgtactaccacctgatttaagaccacttgtaccaattgaaggtggtcgttttgctact
tctgatcttaatgatctttatagaagagttatcaacagaaataacagacttagaaagcta
gttgatcttaacgcgccagatattattgtgcgtaatgaaaagagaatgctacaagaatct
gtagatgccttactagataatggtagacgcggtagagctgtaacaggttctaataagcgt
ccacttaaatctttagcagatatgattaaaggtaagcaaggtcgtttccgtcaaaacctt
ttaggtaagcgtgttgactattctggtcgttcggtaattacggtaggtccttcacttagg
ttacatgagtgtggtttacctaagaagatggcattagaattgtttaaaccatttgtatac
tctaagctaagattaggtggctacgctactactatcaaacaagctaagcgtatggttgag
cttgaagaagctgtagtatgggatattctagaagttgtgattaatgaacatccagtactt
cttaaccgtgctcctacacttcatagacttggtattcaagcatttgaacctaagctgata
gaaggtaaagctatccagcttcatccattagtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggctgtacatgtacctttaactgtagaatctcagttagagtctcgtgtg
ttgatgatgtctacaaataatatcctttctccagcatctggtcagccgattattactcct
acacaggatattgtacttggattgtactatattactcgtgaaaaagagggtgctaaaggc
gaaggtaagttatttgctagttatgatgatgtagcaagagcgtataattctggtactatt
gaaattcatacaaaaattaagctaagaattgatagacaagtttttgatactaaaggtaat
acctataatgaaaagggtgtggtaaatactactgttggtagagctttactaataaacatc
ttaccagatggtatatctttctcattcataaacaaagttttagctaagaaagaaatttct
aaagtaattaaccaagcatttagggtattaggtggtaaagctactgtagttcttgctgat
aaacttatgtatgctggtttcaaatactctactatttcaggtatttctgtgggtgtcaac
gatatgactattccagatattaaagaagctaaagtagaagctgctgaagaagagattaaa
caagtaactgaacaatatcagtcttcattaattactgaaaatgaaagatataacaacatc
attaacatttggagcaaagtctctgatgaggttggcgccttgatgatggatgagatttct
aaagatactattacaataaatggtgagaaaaaagacattgagtcatttaactctgtgtat
atgatggctaattctggtgcaaggggttcttataaccaaatgcgtcagttagcaggtatg
cgtggattgatggctaaaccagatggtacgatgatcgagactgctattactgcaaacttt
agagaaggcttgtcagtacttcaatactttacatctacgcatggtgctcgtaaaggtctt
gccgatacagctcttaagactgctaacgcaggttacttaacgcgtagactagtagatgta
gctcaagatttagttatcatcgaagaagattgtggtacagaagacggacttatgttctca
gctattgttgaagacggtgaagttaaagtacctctagctgaaagagcgttaggtagaact
ttagctgctgatgttatcactgaaaaaggcgatgttttattagaagcaggtactttactt
gatgaaaatcttgttgagttacttgatgataatgctattgatatgatcaaacttagatcg
ccaattagctgtaatactcgtcgtggactatgtgctacttgttatggtcgtgacttggct
cgtgagagaaaagtaaacgttggtgaatctgtaggtgtaatcgctgcccaatcaattggt
gagccaggtacacagcttacaatgcgtactttccatacaggtggtgctgcatcacttggt
gttacagtttctgacatcaaagttaaaactgcaggtaagattaagcataaaaacatccgt
acagttacaaataaagaaggcaatgagattgttatatctcgtgctggtgaaattattgta
tcagatagtatgggtcgtattcgtgagcaacataagatccctatgggtgcatctttacca
ttaaaatcaggtaaagcagtagaaataggtgatgtaattgctacttgggatccgcatgct
cagccgttaattactgatgttgcaggtaaaattgcaatggaagatattatcgatggtatt
acttctaagcatacttatgatgatttaactggtcagctaactattgagataacttctatt
tcacaaagaactacagctaaaaacttaaagccagtagttaatgttgttgatgaaaaaggt
gaggttattaagtctatatctctagctattggagcagtactaagtgttgcggatgatgct
atggttgatataggtgatgtaattgctaagattcctttagaaggctcaaaaaacaaagat
attactggtggtcttccacgagttgctgaactttttgaagctagaagacctaaagaagct
gcagtactttcaccttgtgatggtacagtaagacttggtaatagagatactaaagagaag
caaagaatcgagcttttagataaagatggtcatcttattgatgaaatcttaatgcacaaa
tcaagacatttagttgtgtttgatggtgagaaagttgttaaaggcgatgtattggctgat
ggccctactgatccacatgatttacttaagtaccgtggtttgaaagcatttgctgattat
ataatgtttgaagcacaatcagtttaccgtatgcaaggcgttgtaattaatgacaagcat
attgaaactattgttagacagatgatgagaaaagctaaggttcttgatcaaggtgatagt
aagtttgttaagaatgaagttgctgagcttgttagaattttcgaagagaatgacaagctt
cgtagtgaagataagaaagaagtaacttttgagcctatgttaatgggtattacaagatct
tctctatctacagaatcattcttgtcagcagcatctttccaagaaactactagagttctt
acagaagcttctattcactctcaagtggataacttaagaggtcttaaagagaatgtactt
ataggtagattaatacctactggtacaggtcttgcagtaagaaaagaaactgacaaaatt
gagaaaatgcgtgaagaacttggggtagatgataatctactactttctgatgtgtcttct
tcatttggtgttagtgaaaattctgctgaagaagctcaagtagaagaagagaaagacatc
aatgaagatattgaagaatcattaagaaatgctcttgaatcattagatttctaa
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