Flavobacterium agricola: K5I29_01835
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Entry
K5I29_01835 CDS
T09474
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fag
Flavobacterium agricola
Brite
KEGG Orthology (KO) [BR:
fag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fag03009
]
K5I29_01835 (rlmD)
Enzymes [BR:
fag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K5I29_01835 (rlmD)
Ribosome biogenesis [BR:
fag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K5I29_01835 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Met_10
Cons_hypoth95
Methyltransf_15
Methyltransf_11
TRAM
FtsJ
PrmA
N6_N4_Mtase
PCMT
UPF0020
N6-adenineMlase
Motif
Other DBs
NCBI-ProteinID:
UYW01692
LinkDB
All DBs
Position
complement(369391..370800)
Genome browser
AA seq
469 aa
AA seq
DB search
MRKKTDKIVFENVEVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVIDIQTFKKRKAYYEGK
AIAFHKLSEDRIEPICEHFGACGGCKWQNMNYDKQLFYKNQEVYNNLKRIGKIELPEFEP
ILGSKEQFFYRNKMEFSFSNARWLTDDEIKSDAELVRENGLGFHIPKMWDKILDIKKCFL
QPDPSNEIRNAIREFATANNMEFFNPREQSGFLRTLMIRTASTGELMIVIQFFKEDVAKR
ELLLNFLLEKFPNVTSLQYLINGKANDTIYDQEVICYHGRDHIIEEMEGLKFSINAKSFY
QTNPEQAYELYKITRDFAGLTGEELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADA
KINAERNNITNCDFFVGDMKNVFNDEFIAQHGQPDIIITDPPRDGMHKDVVEQILKIAPK
RVVYVSCNSATQARDLALMDEMYKVIRVRPVDMFPQTHHVENVVLLEKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaaactgacaaaatcgtattcgaaaacgtagaagtcctagatgcgggtgca
aaaggtgtttctgttgcgaaagctccagatggcaaggtaatatttattccgaacgttgtt
ccgggtgatgttatcgacattcaaacatttaaaaaacgtaaagcttattatgaaggtaaa
gccattgcttttcataaattatctgaagatagaatagaaccaatttgtgaacattttggt
gcttgtggtggttgtaaatggcaaaacatgaactacgacaaacaattgttttacaaaaac
caagaagtttacaacaacttaaaacgcattggtaaaattgaattgcctgaatttgaacca
atattaggttctaaagagcagtttttttaccgcaataaaatggaattttcgttttctaat
gctcgttggttaaccgatgacgaaataaaatcggatgccgaattggtgcgcgaaaatggt
ttaggttttcacattccaaaaatgtgggataaaattttagacattaaaaaatgtttttta
caaccagatccatctaacgaaattcgaaatgctattcgtgaatttgctaccgcaaataat
atggagttttttaacccacgcgaacaatctggttttttacgtacgttaatgattcgtacc
gcatcaaccggcgaattaatgattgtaattcaattctttaaagaagatgtagcaaaacgc
gaattattattaaactttttgttagaaaaattcccgaatgttacctcgttacaatattta
attaacggcaaagcaaacgataccatttacgatcaggaagttatttgctaccacggccgc
gatcatattattgaagaaatggaaggtttaaagtttagcatcaacgccaaatctttttac
caaaccaatccagaacaagcgtacgaattatataaaataacacgtgattttgctggctta
accggagaagaattggtttacgatttatataccggaaccgggaccattgctcaattcgtt
gctaaaaaagctaaaaaagttattggagttgaagctgtgccagaagcaattgctgatgcc
aaaattaatgccgaacgcaacaacattaccaactgtgatttttttgttggtgatatgaaa
aatgtgtttaacgacgaatttattgcacaacacggacaaccagatattattattaccgat
ccgccacgcgatggtatgcacaaagatgtggtagaacaaattttaaaaattgcgccaaaa
cgtgtagtttatgtaagttgtaactcggcaacgcaagctcgtgatttggctttaatggac
gaaatgtacaaagtaattcgcgttcgaccggtagatatgtttccgcaaacgcatcacgta
gaaaacgttgttttattagaaaagaaataa
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