Flavobacterium agricola: K5I29_05630
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Entry
K5I29_05630 CDS
T09474
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fag
Flavobacterium agricola
Pathway
fag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5I29_05630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fag03019
]
K5I29_05630
03009 Ribosome biogenesis [BR:
fag03009
]
K5I29_05630
Enzymes [BR:
fag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5I29_05630
Messenger RNA biogenesis [BR:
fag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5I29_05630
Ribosome biogenesis [BR:
fag03009
]
Prokaryotic type
rRNA helicases
K5I29_05630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
GTP_cyclohydro2
Peptidase_S78_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UYW02375
LinkDB
All DBs
Position
1130351..1132198
Genome browser
AA seq
615 aa
AA seq
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MNNFEQLGLNESLLLAIKDLGFENPSEVQQKAIPLLLENDIDIVALAQTGTGKTAAFGFP
IIQKIDANNRGTQALILSPTRELCLQITNEIKNYSKYVKGLNTVAVYGGASIHDQARDVK
RGAQIIVATPGRMQDMINRGLVNIENINYCVLDEADEMLNMGFYEDIRSILSHTPENKFT
WLFSATMPQEVARIAKDFMKSPTEITVGHKNQGNTSVTHEFYIANARDRYAALKRLADAN
PDIFSVIFCRTKRDTQQVAEKLVEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDDVTHVINYQLPDEVETYTHRSGRTGRAGKTGTSMIIITKSELRKINQIERI
MKNKFIEKPIPSGAEICETQLIHLANKIKNVEIDTEIDQYLPAINEVLADLSKEDVIKKL
VSLEFNRFISYYKNSRDLTSQVSDRDRKSSNTIPTDGAVRYFINIGQKDDFDWMSLKDFL
RDTLELGRDDLFKVDVKDGFSFFNTDAEHAEKVMSVLNGYEHNGRRINVEISKNDGGSNS
RRRDHNGRGGSDRKPFERRGERNDRNDRGSRFDRGEKRSDSGNRRSTDRSRDDRAPRNER
RTRISSDFSSSRRRS
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttgaacaattaggattaaatgaatcgctactgctggcgattaaagatcta
ggatttgaaaatccgtcagaagtacaacaaaaggcgattcccctattattggaaaacgat
atcgacattgttgctttagcgcaaacagggacaggaaaaacagctgcatttggctttcca
atcatccaaaaaattgacgcaaacaacagagggacacaggctttaattttatcaccaaca
cgtgagttatgtttacagattacaaatgaaatcaaaaactactcaaaatacgttaaaggg
ttaaatacggttgcggtatatgggggagcgagcatacatgatcaggctcgagatgttaaa
agaggtgcacaaattattgtggcaacacccggaagaatgcaagatatgattaaccgcgga
ttggttaacattgaaaacattaattattgtgtgttagacgaggcagatgaaatgctgaac
atgggattctatgaagatatccgttctattttatcacacacaccagaaaacaaatttaca
tggttattctctgcaactatgcctcaagaggtagcaagaatagcaaaagattttatgaaa
tctccaactgaaattacagtggggcataaaaatcaaggaaacacaagcgtaacgcacgag
ttttacattgctaacgcacgcgacagatatgcagctttaaaacgtttagcagatgcaaac
cctgatattttctcggttattttctgtcgtacaaaacgtgatacacaacaagttgcggaa
aaattagttgaagacgggtacaatgcagcagcattacacggtgatttatctcaggcacaa
cgtgacggagttatgaaatcgttccgtggtcgtcaaattcaaatgttagtagctacagac
gttgctgctcgtggaattgacgtagacgatgttacacacgtaattaactaccaattacca
gacgaggttgaaacatacacgcaccgttcaggacgtacaggacgtgcaggtaaaacaggt
acttcaatgatcattatcacaaaatctgaattacgtaaaattaatcagattgagcgtatc
atgaaaaacaaattcattgaaaaaccaatcccatctggagctgaaatttgtgaaactcaa
ttaattcacttagcaaacaaaattaaaaatgtagaaattgacactgaaattgatcagtac
ttacctgcaattaatgaagttttagctgatttatctaaagaagatgttattaaaaaactt
gtttctttagaatttaatcgtttcatatcttactacaaaaactcacgcgatttaacttcg
caagtttctgatcgtgatcgtaaaagcagcaatacaattccaacagatggtgctgttcgt
tactttatcaacattggtcaaaaagatgattttgattggatgtcgttaaaagatttttta
cgtgatacgttagaattaggtcgtgatgatttatttaaagttgatgttaaagacggattc
tcattctttaatacagatgcagaacatgctgaaaaagtaatgagcgtattaaacggctac
gaacacaacggacgtagaattaatgttgaaatctctaaaaatgacggcggatctaactca
agaagacgcgaccataacggacgtggcggaagtgatagaaaaccgtttgaaagacgtgga
gaacgcaatgatcgtaacgatcgcggatcaagatttgaccgtggtgaaaaacgttcggat
agcggaaacagacgttctactgaccgatctagagatgacagagcgccaagaaatgaaaga
agaacaagaatatcttctgatttcagctcttcaagaagaagaagttaa
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