KEGG   Ferroplasma acidiphilum: FAD_0311
Entry
FAD_0311          CDS       T04783                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
fai  Ferroplasma acidiphilum
Brite
KEGG Orthology (KO) [BR:fai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fai03400]
    FAD_0311
Enzymes [BR:fai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     FAD_0311
    5.6.2.6  RNA 3'-5' helicase
     FAD_0311
DNA repair and recombination proteins [BR:fai03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    FAD_0311
SSDB
Motif
Pfam: DEAD Helicase_C DEAD_assoc ResIII WH_Lhr SNF2-rel_dom Cas3-like_C_2 HypA DEXQc_Suv3 Zn_ribbon_SprT GpA_ATPase FtsK_SpoIIIE Zn_ribbon_8
Other DBs
NCBI-ProteinID: ARD84233
UniProt: A0A1V0N279
LinkDB
Position
273075..275774
AA seq 899 aa
MQQGNVFDMLDPALKESLARNGILNPTEAQKMAIPEILSGENTLLISPTGSGKTEAALVP
LLNKIYLEKPQSIALLYITPLRALNRDMLSRVFDYCRTLDIRVQVRHSDISQAERNEISR
NPAQILITTPESLQLLMMGKRLREHIKNIKYVIVDEVHEMAQNERGSQFAIAMERLKVLA
GNFQVIGLSATAKNEDELSLFISPSSPCKILKPVIDKKMDIKVILPPPSNDDIANIMACD
NQYAGSIEKIHSIVEENKGTIVFVNRRYVAEDISFRLRLWLKDPDIEVHHGSLSRETRET
AEMDFKENRVKALICTSSLELGIDVGSADMVVQFNSPRQINKMVQRIGRAGHSLQKVSRG
IVICNDVIELEEAKAIVGNIKLGELENVMIKKNSLSTVANQIMLELNYSKKVDYNYLYRI
ITGAYPFKTLEFEEYYAVLELLSRTHKIIIDGNFIIKRYPVLKYFIENISMIAGEKNYRV
IDVINKKFIGTLDEKYVVNEISPGSYFVIKGSTWRTIRIDDDKIYVEPFSTAAIAPHWTG
EEIPVLYEAASRVSQDRKEKYVPEFLNDRGKKALEEWYKNDMATLDKIIIEAHNSEIIIQ
ILLGSLGNFTLAQILSGLLTSITGESVEMDYSPYHIYMRVSRNISAEDVKNLIMNIDINN
LDGYVKSSARRSRFFNNVFLYEARKFGIITNEADITRIRFEKIVDSYYNTVVYEDSIRKL
IFDYMDINVLHDYLENLDDSNFILKNKISDSSNIFLSHYSERVMPLKPTKTILESIRKRL
MNEEVILYCTSCGNKRTRKIKDITEIRCPVCHSRLVASISKFDEESISKKIDEKTRKRMI
KNAHLVREHGITAVMVMAARGVGPEIASRILEVSYLNEDDLIRRLLNAETDFAKNRQYW
NT seq 2700 nt   +upstreamnt  +downstreamnt
atgcaacagggaaatgtatttgatatgcttgatccggcactaaaggaaagcctggcaaga
aacggtattttaaatccaacagaagcacagaaaatggcaattcctgagatattgtcagga
gagaatacccttcttatatcacctaccggatctggaaaaacagaggcggcactggttcca
ctgctaaataaaatatatcttgaaaaaccacaatccatagcccttctttacataactcca
ctgagggcattgaaccgtgatatgctttcaagggtatttgattactgcagaacccttgat
atacgggtgcaggtaaggcatagtgatatatcccaggcagagagaaatgaaatatccaga
aaccctgcacagatacttattacaacaccggaatcattgcagttgctcatgatgggcaaa
aggctccgcgagcacataaaaaatataaagtatgtaatagttgacgaagtccacgaaatg
gctcagaatgaaaggggctcacagtttgccatagctatggagcggttaaaggtgcttgca
ggaaattttcaggttatagggctctctgccactgcaaagaatgaagatgaactttcactt
ttcatctctccttcatccccctgcaaaatattaaaacctgtgatagacaagaaaatggat
ataaaggttattttgcctcctcccagcaatgatgatattgctaacattatggcatgtgat
aaccagtacgcagggtctatagagaaaatacattctatagtggaggaaaataagggcact
attgtatttgtcaatagaagatacgttgctgaagatatctcattcaggctaaggctatgg
cttaaagatccggatattgaagtacatcacggatcactatcccgcgaaaccagggaaaca
gccgaaatggattttaaggaaaaccgggtaaaggcacttatttgtacttcatctctggaa
cttggaatagatgtgggttcagcggacatggtagtccagtttaattctcccaggcagata
aataaaatggtacagagaattggcagggcaggtcattctttgcagaaagtttcccgcggg
attgtaatatgcaatgatgttatcgaacttgaagaagcaaaggctatagttggcaatatt
aaattaggggaactggaaaatgtaatgataaagaaaaattccctttcaaccgttgcaaac
cagataatgctcgagcttaattactcgaagaaagtggattataattatctgtatagaata
attaccggtgcatatccatttaagactctagaatttgaagaatattatgctgtgctggaa
cttctttcaagaacacataaaatcatcatagatggcaattttattataaagcggtatccg
gttcttaaatactttatagaaaatatatcaatgatagcaggtgaaaaaaattacagggta
attgatgtaattaataaaaaatttataggaaccctggatgaaaagtatgttgtgaatgag
atttctccaggttcatattttgtcattaagggttcaacatggaggacaataaggatagat
gatgataaaatatatgttgagcccttcagcacggcagccattgcaccacactggacaggc
gaagagataccggttctctacgaagccgcatccagagtatcacaggacaggaaagaaaaa
tatgttccggaattcctgaacgatcggggcaaaaaagcccttgaagaatggtataaaaat
gacatggctacactggataaaatcataatagaagcccataattcagaaattattatacag
atccttctgggaagccttggcaactttaccctggcacagatactatccgggctgctaaca
tcaatcacaggagaaagcgtggaaatggattattcaccataccacatatatatgagggtt
tcaaggaacatttcagcagaagatgtaaagaatttaattatgaatatagatataaacaac
cttgatggctatgtcaaatcatctgcccggagatcaagattcttcaataatgtattttta
tatgaagccagaaaatttggcatcataacgaatgaagcggacataaccaggatccgtttt
gaaaaaatagtggactcatactataatacagttgtatacgaagattccataagaaagctc
atatttgattacatggatattaacgttctgcatgattaccttgaaaaccttgatgattca
aattttatactcaaaaacaaaatctcagattcttcaaatatattcctgtctcattattct
gaaagggtcatgccactcaagcctacaaaaacaatacttgaatcaattcgcaagcggctt
atgaatgaggaagttatactttactgcacatcctgcggtaataaaagaaccaggaaaata
aaagatattacggaaataagatgtcctgtctgccattcacggcttgtggcttcaatctca
aaatttgatgaggagtcaatttcaaaaaaaatagatgaaaaaaccagaaaaaggatgata
aaaaatgcccatctggtgagagaacacgggattactgctgttatggtgatggctgcccgc
ggtgttggcccggagatcgcttcaaggatacttgaagtttcatatcttaacgaagatgac
cttataaggcggcttctcaatgcagaaacagattttgcaaaaaatcgccagtactggtaa

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