Flagellimonas alginolytica: ABTP35_00190
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Entry
ABTP35_00190 CDS
T11189
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
faj Flagellimonas alginolytica
Pathway
faj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABTP35_00190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faj03019
]
ABTP35_00190
03009 Ribosome biogenesis [BR:
faj03009
]
ABTP35_00190
Enzymes [BR:
faj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABTP35_00190
Messenger RNA biogenesis [BR:
faj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABTP35_00190
Ribosome biogenesis [BR:
faj03009
]
Prokaryotic type
rRNA helicases
ABTP35_00190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF3194
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XHB41681
LinkDB
All DBs
Position
40409..42163
Genome browser
AA seq
584 aa
AA seq
DB search
MTKFEALGLDKPLLDAISDLGFESPSEVQEKSIPILLEQETDLVALAQTGTGKTAAFGFP
MIQKIQSDSRTTQGLILSPTRELCLQITNELKLYSKYIKGLNVVAIYGGASITEQARQIK
RGAQIVVATPGRMKDMIGRNMVDISKIDYCVLDEADEMLNMGFYEDIKDILSNTPQEKLT
WLFSATMPKEVATIAKKFMYKPVEITVGSKNAGASTVQHEYYVVGGRDRYAALKRLADAN
PGIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKAIEKK
IQQDFISKKIPDGIEICEIQLYHLANKIKETKVNQEIDSYLPAINDVLEGIDREELIKKI
FSVEFTQFYNYYSKTKDLNTQDSGREKGGASGDIPSEGSVRYFINVGERDGYDWMSLKDF
LRDTLNLEKEDVYNVDTKDSFSFFNTDAQLTEFILQTFTDFKLEGRFINVEVSKNPGGGG
GKGGKKRRNRKGGGSGRRGGNKSYKGGKKGGYGKKVGKKKQGFY
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagccttggggttggacaaacccctattggatgctatttccgacctt
ggatttgaatccccctccgaagtacaagaaaaatcaatcccaattttattggagcaggaa
accgatttggttgccctggcccaaacaggaactggaaaaactgctgcatttggatttcct
atgatccagaagatccaatcggacagcaggaccacacaaggattgatcctctcacctaca
cgtgagctctgcttgcagataacgaacgaattaaaactatactccaaatacataaaagga
ctcaatgtggtggccatttacggtggcgcaagcattaccgaacaggcccgacagataaaa
agaggtgcacagatcgttgtagctacccctggccgtatgaaggacatgatcggccgaaat
atggtggacatttccaaaattgattattgtgttctggatgaagccgatgaaatgctgaat
atgggcttctatgaagatattaaggacattttatccaacaccccgcaagaaaagctaaca
tggctcttttcggcaaccatgccaaaagaagtggcaaccattgccaaaaagttcatgtac
aaacctgtggaaattacagttggttccaaaaatgccggagcttccacagtacagcacgaa
tattatgttgttggaggccgtgatcgttatgcagccctaaaacgtttggccgatgccaac
ccaggtatcttctccgtagttttctgtagaaccaaaagggatacacaacgtgttgcggaa
aaattgatcgaagacgggtacaatgccggagcactacatggtgatttgagccagaaccaa
cgggatctggtcatgaactcgttccgaaaaaaacaagtacagatgttggtagctaccgat
gttgccgcgcgtggaattgatgttgacgatgtaacccacgttatcaactaccagttaccc
gatgaaatagagacctacacccaccgtagtggtcgaacgggacgtgccggcaaatccgga
atctccatggtaattgtgacccgctcggagttgagaaagatcaaggcgatagagaaaaaa
atacaacaggattttatctccaaaaaaattcccgatggtattgaaatctgtgagatacaa
ttataccatttggccaataagatcaaagaaaccaaggtcaatcaagaaattgacagttat
ttgcccgccatcaacgatgttttggaagggatagatcgcgaagaactcatcaaaaaaata
ttctcggtagagtttacccaattctacaactattacagtaagaccaaagatctaaacacc
caggattccggaagggagaaaggtggggcgtccggggatattccatccgaaggatccgta
cgatactttatcaatgttggtgaacgcgatggttatgattggatgagcttgaaagacttc
ctaagagataccttgaacttggaaaaagaagacgtctataatgtggataccaaggattct
ttctcctttttcaacaccgatgcacaacttaccgagtttattcttcaaacctttacagac
tttaaactggaaggacgttttataaatgttgaagtttccaaaaacccaggtggtggcggc
ggaaaaggaggtaaaaaacgtcgcaatcgaaaaggcggcggcagtggccgaagaggaggc
aacaagtcctacaaaggaggaaaaaaaggagggtacggcaaaaaagtaggcaagaaaaaa
cagggcttttattag
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