Flagellimonas alginolytica: ABTP35_08660
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Entry
ABTP35_08660 CDS
T11189
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
faj Flagellimonas alginolytica
Pathway
faj03030
DNA replication
faj03430
Mismatch repair
faj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
faj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABTP35_08660 (dnaE)
03430 Mismatch repair
ABTP35_08660 (dnaE)
03440 Homologous recombination
ABTP35_08660 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
faj03032
]
ABTP35_08660 (dnaE)
03400 DNA repair and recombination proteins [BR:
faj03400
]
ABTP35_08660 (dnaE)
Enzymes [BR:
faj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABTP35_08660 (dnaE)
DNA replication proteins [BR:
faj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABTP35_08660 (dnaE)
DNA repair and recombination proteins [BR:
faj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABTP35_08660 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
XHB40074
LinkDB
All DBs
Position
complement(1972712..1977097)
Genome browser
AA seq
1461 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDELGNLIEHQDFLIKPEGFNIPY
ESEQIHGISTALAEEKGVPLSEVLEAFNNALEQTKFVVGQNVGFDVNIMGCEFHREGVES
PLTELLVLDTCTEHTAELCKIPGGRGGKFKLPTLTELHEFLFGEPFAEAHNATADVEATT
RCFLELVRKKQYSYQELDVQPDYFERFSQSNPQEIELIGLKHLNLKAESKKIADALWEKD
TSGVSDEEIQENVENLEDEPFVHLHNHSQFSVLQSTINIKDLVKATAKNGMPAVALTDHA
NMMGAFHFVKEVMGHNKAAKAKNEELIAKGEQPTEKEITPIVGCEFFVCDDHTNKNVKDY
GHQIVLLAKNKKGYHNLAKMSSIAYTDGFYYVPRIDKKVIEQYKEDIIALTGNLYGEVPN
KILNVGEKQAEEALLWWKDLFGDDFYIEIMRHGQEDEDRVNQVLVRMAKDHNVKLVATNN
TYYCDKKDAEAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEMKELFKDLPE
AILNIKEIVDKIEPYDLASDILLPKFDIPEDFKDPEDEVDGGNRGENAYLRHITYKGAEK
RYGEITEEIRERIDFELEIIKNSGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAY
CLTITNIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIIT
YGTMAAKSSIRDTARVLDLPLSEADRIAKLIPNMSKLNKIFGVDEADLKKKFRSDELEKV
HELLNIAETDDLEGQTVKMARVLEGSLRNTGIHACGVIITPDDITNFVPVSVAKDSDLYV
TQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKARTGIDLVPDDFPLDDEKTYELFQR
GDTVGIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEITYD
LPDMEEYLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLD
GGEKNGHPRDVLEKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSN
NMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNKDNAVRFGMGAIKGVGRSAVETI
VENRKEGGAYRSIFDMAKRVDLRAANKKAFENLALAGGFDSFGDTHRAQYFHDEGDGITF
LEKAVKYGSKFQENQNSSQVSLFGEASDVQIPEPIVPPCEEWGTMEKLRREKEVVGIYIS
GHPLDDFKKEIKAFCKNTVSDFSRLDEYVNRELTVAGVITDVQHRVSKNGKGWGLFTLED
YNESYELRIFGEEYLKFRHFLMINSFVHVRAFVREGWVNRDTGKKGEPRLQFNDFKQLQD
VMDAFAKKLTIKLNIDRLQEQRIKTLKDTLTMHKGDHPISFVIYEMQEEIKLKLSSRKQK
VKINSELLAELEANEIHYKLN
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgatttttgatacggaaaccactggtttgcccaaacgctgggatgccccgatt
accgataccgacaactggccaaggtgtgttcagattgcatggcaattgcacgacgagcta
ggtaatttgatagaacatcaagactttttgataaaaccggaaggattcaacatcccttac
gaatcggaacagattcacggtatctccactgccttggcagaagaaaaaggagttcctctt
agcgaggttttggaagctttcaacaatgcattggagcaaaccaaatttgtggtaggtcaa
aatgtagggttcgacgtcaatattatgggatgcgaattccatcgcgagggcgtcgaaagc
cctctcaccgaactgctcgtactggacacttgtacagaacacactgccgaactttgtaaa
attcccggaggacgtggtggaaagtttaaattgcccacgcttaccgaactgcacgaattt
ttgttcggtgaaccttttgccgaagcacataatgcaacggcggatgtggaagccaccaca
cgctgcttcttggaattggtccggaaaaaacagtattcctatcaagaactggatgttcag
cccgattattttgaacgattttcccagtccaatccccaggaaatagagctcatagggtta
aagcacctcaatctcaaggccgaatcaaaaaaaattgcggatgccctctgggaaaaggac
actagcggggtttcggacgaggagatacaagagaatgtggagaatttggaagatgaaccc
tttgtacatctccacaaccattcccagttttcagtgcttcaatccaccatcaacatcaaa
gatttggtcaaggccacagcaaaaaacggtatgcccgccgttgctttgacagaccatgcc
aacatgatgggagcctttcactttgtgaaagaagtaatgggacataataaggcggcaaag
gcaaaaaacgaagaactcatcgccaagggcgaacaacccaccgaaaaagagattacccca
atagtaggctgtgaattttttgtatgcgacgatcataccaataaaaatgtgaaggattac
ggacatcagatagtactcctggccaaaaacaaaaaaggctaccacaatctggcaaaaatg
tcttctatcgcctataccgacggcttttattatgtacctagaatcgataaaaaagtaatc
gagcaatacaaggaagatattatcgcccttaccggtaacctatatggggaagtacccaac
aaaatattgaacgtaggcgaaaaacaggccgaagaagccttgttatggtggaaagacctg
tttggagatgatttttatatcgaaatcatgcgccacggacaggaagacgaagaccgtgtc
aatcaagttttggtgcgtatggccaaagaccacaacgtaaaactggtggccaccaacaat
acctactattgcgataaaaaggatgccgaggcacacgatattttactctgtgtaaaggac
ggtgaaaaacaatccacacctattggcaggggtcggggttatcgatatggacttcccaac
caagagtactattttaagtcttcggacgaaatgaaggaactctttaaggatttgcccgaa
gctattttgaacatcaaggaaattgtggacaaaatagagccctacgatcttgccagcgat
atcctgcttccaaaatttgatattccagaagattttaaggacccagaagacgaggttgac
ggcggtaatcgaggagaaaatgcctacttaagacatattacctacaaaggggccgaaaag
cgatatggcgaaataaccgaagaaatcagggaacggatagactttgagttggaaattatt
aaaaactcagggtaccccggatactttttgatagtggaagactttatccgtgaagcaagg
aacatggatgtttccgtaggaccaggtcgtggttccgccgctggttcggtggtggcctat
tgccttaccattaccaacatagaccccatgaagtacgacctgctttttgagcggttccta
aatccggacagggtgtccatgcccgatatcgatattgattttgatgatgaaggacgtggt
cgggtaatggactatgtgatcaataagtatggagccaatcaggttgcacagatcatcacg
tacggaaccatggctgcaaaatcatccattcgagatactgcaagggtattggaccttcca
ttgagtgaagctgaccgaattgccaagttgattcccaacatgtccaaactcaacaaaata
tttggagtggacgaagccgacttaaaaaagaaattccgttcggatgagctggaaaaggtc
catgaactactcaatattgccgaaaccgacgatttagagggacagaccgtaaaaatggcc
cgagtgttagagggttctcttcgaaatacgggcattcatgcttgtggggtgatcattaca
ccggacgatattaccaactttgttcccgtatccgttgccaaggattccgatctgtacgta
acccagttcgacaactccgtagtggaaagtgcaggtctgctaaaaatggatttcttggga
ctaaaaaccttgaccctgatcaaggacaccgtcaaaattgtaaaagcgagaacagggata
gatctggtacccgatgattttccattggatgatgaaaaaacatacgagcttttccaacga
ggagatacggtagggatattccaatacgaatcccctgggatgcaaaaacacatgaaaaac
ctaaaacctacggtttttgatgatttgatagccatgaacgccctctaccgaccgggcccc
atggaatacatcccaagctttatcgcccgtaaacatggagacgaagaaatcacctatgac
cttcccgacatggaagaataccttaaggagacctacggaattaccgtataccaagagcag
gtaatgctgctctcacaaaagctggccggtttctccaaaggtgatgcggatgtactccga
aaggccatgggcaaaaagatttttgccctgctggaaaaactaaaaccccagtttttggac
ggtggcgaaaaaaatggacatccacgggatgttttggaaaagatctggaaggattgggaa
gcctttgcctcttatgccttcaacaaaagtcactccacttgttacgcctacatagcctac
caaacggcctatttaaaagcccactatcctgccgaatatatggcggccgtgctgtccaac
aacatgaacgatattaagcaggtcaccttttttatggaggagtgtaaacgaatgggactg
gaagtattgggccctgacgttaacgaatcctactataaatttgcggtcaacaaggacaat
gccgtccgctttggcatgggtgccataaaaggagtagggcgctctgccgtagagaccata
gtggaaaaccggaaagaaggaggggcgtacagatcaatttttgatatggccaaaagggta
gatctaagggctgccaacaaaaaagcgttcgaaaacttggcgttggcaggaggcttcgac
tctttcggcgacacccaccgtgcacagtattttcatgatgagggcgatggcatcacgttc
ttggaaaaagctgtcaagtacggttccaaatttcaggagaatcaaaattcgtcccaagta
agcctttttggcgaagcgagcgatgtgcagattccagagcccattgttcctccttgcgaa
gaatggggaaccatggaaaaactgcgacgcgagaaagaagtggtcggcatttatatttcc
ggccacccgttggatgattttaaaaaagagatcaaagcgttctgcaagaacacggtgagc
gatttctcccgtttggacgaatatgtaaatcgagaacttaccgttgcaggtgttattacc
gatgtccagcatagggtatccaaaaatggcaaaggctgggggctttttacattggaagat
tataatgaatcctacgaactacggatttttggagaagaatacttaaagttccggcatttt
ttaatgatcaattcctttgtacatgttagggcctttgttcgcgaaggatgggtgaaccgc
gatacgggcaaaaaaggagagccaaggctccagttcaacgattttaaacagcttcaggat
gtaatggatgcctttgcgaaaaagttgaccatcaaactcaacatagaccgcctgcaagaa
cagcgcataaaaaccttgaaggacactttaaccatgcataaaggcgaccatcctattagt
tttgtgatttacgagatgcaagaagaaatcaaactaaaactatcgagtcgaaaacaaaag
gtaaagatcaacagcgaattacttgccgaactggaggcgaacgaaattcattataaattg
aactag
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