Flavobacterium alkalisoli: FUA48_12790
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Entry
FUA48_12790 CDS
T06875
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fak
Flavobacterium alkalisoli
Pathway
fak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FUA48_12790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fak03019
]
FUA48_12790
Enzymes [BR:
fak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FUA48_12790
Messenger RNA biogenesis [BR:
fak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FUA48_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
P-loop_SecA
ERCC3_RAD25_C
Gypsy
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEE51522
UniProt:
A0A5B9G1X6
LinkDB
All DBs
Position
complement(2797085..2798371)
Genome browser
AA seq
428 aa
AA seq
DB search
MKFEDLNLLKNIQQALADEGYENPTPIQEQAIPVILEENDLVGCAQTGTGKTAAFAIPML
NILHRIVGSAKKRKLIRALVVTPTRELALQVGESFDTYGKYTNIRQVTIFGGVNQTPQVD
QLKKGVDILIATPGRLLDLHKQGFVDLDHLHFLVLDEADQMLDMGFINDVKKIIKLTPDN
RQTLLFSATMPLPIRELADTFLTNPKYVSVTPISSTAEKVKQQLYLVDKADKRKLLYHLI
RNENLKNVLVFTRTKHGADNVVKALKKNGVEAGAIHGDKSQSARQRMLDAFKNKEISVLV
ATDIAARGIDIESLPYVVNFDLPNIPETYVHRIGRTGRAGNSGLAISFCGRDELPYLKDI
EKLIRMKLKVMEEHPYPFAEQDKENKPEGQKPDLRNKNKNARSGKSKPGGKSNSRKSEAS
KKKKKRWY
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagatcttaatttacttaagaacatacagcaggcccttgcagatgaaggg
tatgaaaatcctactccaatacaggagcaggctattccggttattctggaagagaacgac
cttgtgggctgcgcacaaaccggtacaggtaaaactgcagcatttgctatccctatgctt
aatatattacaccgcatagtaggctcggcaaaaaagagaaaacttatcagggcacttgtt
gtgacccctacccgcgaacttgcattacaggttggtgaaagcttcgatacttacggtaaa
tacacaaacatacgtcaggtaactatttttggcggggttaatcagactccgcaagtagat
cagcttaaaaaaggggttgatatacttatcgctactcctggaaggcttttagaccttcac
aaacaaggatttgtagatttagaccatctgcactttttagtacttgacgaagccgaccag
atgctggacatgggctttattaatgatgtaaagaagattattaagcttacacccgataac
aggcaaacattactgttctcggctactatgcctttgcctattcgcgaactggcagatact
ttcttaacgaaccctaagtatgtttcggtaacacctatatcatcaactgccgaaaaggta
aaacagcagctgtatcttgtagacaaagccgataaacgtaagctgttgtatcatcttatc
cgtaatgaaaaccttaagaatgtactggtatttacacgtaccaaacacggcgcggataac
gtagtgaaagcactaaagaaaaacggtgttgaagcaggcgccatacatggtgacaagtca
caaagtgcaagacagcgcatgctggatgcctttaaaaacaaagagatatcggtactggtg
gctacagatattgctgcaaggggtattgatatagaaagtcttccttatgttgtaaacttt
gacctgcctaacattcctgaaacctatgtacaccgtattgggcgtacaggacgtgcgggt
aactcaggactggcaatatctttttgcggacgtgatgagcttccttaccttaaggatata
gaaaagcttatccgtatgaagcttaaggttatggaagaacacccttatccgtttgctgaa
caggataaagaaaacaaacccgaaggacaaaaacctgatttaaggaataaaaataagaat
gcccgaagcggcaaatcaaagccgggaggaaaatctaactcaagaaaatctgaggcttca
aagaaaaagaaaaaacgctggtattaa
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