Frankia alni: FRAAL0246
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Entry
FRAAL0246 CDS
T00384
Name
(GenBank) hypothetical protein; putative helicase.
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
fal
Frankia alni
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fal03009
]
FRAAL0246
03012 Translation factors [BR:
fal03012
]
FRAAL0246
Enzymes [BR:
fal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FRAAL0246
5.6.2.5 RNA 5'-3' helicase
FRAAL0246
Ribosome biogenesis [BR:
fal03009
]
Eukaryotic type
Other ribosome biogenesis factors
FRAAL0246
Translation factors [BR:
fal03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FRAAL0246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Helicase_RecD
AAA_16
AAA_22
PhoH
UvrD-helicase
AAA
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CAJ58923
UniProt:
Q0RU21
LinkDB
All DBs
Position
252165..255155
Genome browser
AA seq
996 aa
AA seq
DB search
MATAPITLPGGIALAPSARVTEQLAGARVQGNEDLDPERFVDQLRRMSGTGVPVRLETDR
NNSTTFRVYTDTHVALLRPTNRDDGYIVTHVARWGFRDHRSLAQGFLRVHCPQWSLYPHV
RYIGAGHRSYSGVLGKAWAALATSAAASARVPARHLDFLDTVERIIMRTRDLERERLAAT
PFLYRARRATREQRYSARGVYEFRLAETYQISEGAQVQVNDDRELRGVVLRSENLDVTVR
FDGIPDFARIPAQGALTVLPSDVVYKAQLGAVAALRDGEATSPRLLATLAEHRILRPSQP
DRSAIPSRPLDGGQLEAYQRALGEPDLLLVLGPPGTGKTWTITEIAVAEAAAARAGAGGP
RRILVTSQSNRAVDNVLAGLADLLRCVRVGNPEALTGPARELTAEVQVEELKDNLLRYTE
PIVSALEPFSGAGGTGDAAGVQLALLRTQIGAAQQSDVVVRSRDAELDDISRRVRAPLEP
QIAAAQTTVERLAAEAARRQERHTRARLRHSKAAGRRVPGWWAAIHRRGVARRQRALQAA
QVRVDEAEQELAAARSDRDGVLAQITMLVARDSVGSRLLAEREYAWGDRERALTQAARAA
EPLRARLELAGCGSGFPDGEADDVAGWERREQGLLDAVGLARTRASLLADWRGRVPTADE
ELKHELVGYADVIAATCIGVSTKKLLTGLSFDLAIVDEAGQIALPDLLVPLVRARRAVLV
GDHHQLPPYLDSEVARWAKGLAPGAELSAPVISETRDIVERSEFERLFERLGAEHGVTLT
TQRRMPATVATFISHSFYGGVLTTEHPGTGPDPLFTSPLAFVDTSDRPPRERQESRAGTN
GGISNRLEANLIATLVARYAGHHRDWAVIVPYREQVQLLRRTLISRLGGPGNVEDNIGTV
DAFQGNERDLIIYGFTRSNRTGSVGFLSELRRLNVAMSRTRRQLVLVGDLDTLGSSTDAG
FAKLIVELRTALSAVGDLRGSREIEARLRGTVEEPR
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggccacagccccgatcaccctgcccggcgggatcgccctcgcaccgagcgcgcgggtg
actgagcaactggccggcgcccgcgtccagggcaacgaggatctcgaccctgaacgcttc
gtcgaccaactccggcggatgtccggcaccggcgttccggtccgcctggagacggaccgg
aacaactcgacgacgtttcgcgtctacaccgacacccacgtcgcgctgctacgaccgacg
aaccgcgatgacggatacatcgtgacccacgtcgcccggtggggcttccgggatcaccgg
agtctcgcccagggctttctgcgcgttcactgcccgcaatggtccctctatccgcacgtc
agatacatcggggctggtcaccgcagctattccggtgtcctgggcaaggcctgggcggcg
ctggcgacgtcggcggcggcgtccgcccgggtgcccgctcgacacctcgactttctcgac
acggtcgaacggatcatcatgcggactcgggatctggagcgggaacggctcgccgccaca
ccgtttctctaccgggcccggcgggcgacccgtgaacagcggtactcagcccgcggcgtg
tacgagttccggttggccgagacgtaccagatctcggagggcgcgcaggttcaggtcaac
gacgaccgggaactacgcggcgtggtcctgcgcagcgagaacctcgacgtgacggttcgg
ttcgacggcattcccgacttcgcccgcatcccggcgcagggcgcgctgacggttcttccg
agcgatgtcgtctacaaggctcagctcggcgcggtcgccgccctgcgggatggggaggcg
accagtccccgcctgctggcgaccctggcggagcaccgaattctgcggccgtcccaaccc
gaccggtcggcgattccgagccgcccgctggacggcggccagctcgaggcctaccagcgg
gcgctgggagaaccggacctgctgctcgtgctcggccccccgggcaccgggaagacctgg
accatcaccgagatcgccgtcgccgaggcggcagccgcccgggccggcgccgggggcccg
cggcgcatcctggtcacctcgcagagcaatcgggccgtcgacaacgtcctggcaggtctg
gccgacctgctgcgctgcgtgcgggtcggcaacccggaggcgctgaccggcccggcccgc
gaactcaccgccgaggtccaggtggaggagttgaaggacaacctcctgcggtatacggaa
ccgatcgtctcggcgctggagccgttttccggggcggggggcaccggcgatgccgccggg
gtccagttggcgctgctgcgcacgcagatcggcgccgcgcagcagtccgacgtggtcgtc
cggagccgggatgccgagctggacgacatctcccggcgggtccgagccccactcgaaccg
cagattgcggcggcccagaccacggtcgagcggctggcggcggaggcggcgaggaggcag
gaacgtcacacccgggcccggctgcggcactccaaggcggccggccgacgcgttcccggc
tggtgggcggcgattcaccgtcgaggtgtcgcccgacgccagcgggccctgcaggccgcg
caggtccgggtcgacgaggcggagcaggaactcgccgccgcccggtccgatcgcgacggc
gtgctggcacagatcacgatgcttgtcgcccgggacagcgtcggttcccggctgctggcg
gagcgggagtacgcctggggtgaccgtgaacgcgcgctcacccaggcggcgcgggccgcg
gagccgctgcgcgcgaggctggagctggcgggctgcggctccggctttcccgacggggag
gccgacgacgtcgctggctgggaacggcgcgaacagggcctcctcgacgctgtcggtctc
gcccgcacccgggcatccctgctggccgactggcggggccgggtccccaccgcggacgag
gagctcaagcacgaacttgtcggctacgccgacgtcatcgccgcgacctgtatcggtgtc
tcgacgaagaagctgctgaccgggctgtccttcgatctcgccatcgtcgacgaggcgggt
cagatcgccctgcccgacctgctcgtccccctggtccgggcccgccgggcggtgctcgtc
ggcgatcaccatcagcttcccccgtacctggacagcgaggtcgcccggtgggcgaagggg
ctcgctccgggcgcggaactgtccgccccggtgatcagtgagactcgggacatcgtcgag
cgcagcgagttcgagcggcttttcgagcggctcggcgcggagcacggggtgaccctgacg
acccaacgccgcatgcccgcgaccgtggcgacgttcatctcgcattccttctacggcggt
gtgctcaccaccgagcatcccggaaccgggcccgatccgctgttcaccagtccgttggcg
tttgtggacacctccgatcggccgccccgggaacggcaggaaagccgcgccggcacgaac
ggcggcatcagcaaccggctggaggcgaacctcatcgccaccctggtcgcccgctacgcc
ggccaccatcgcgactgggcggtgatcgttccgtatcgggagcaggttcagctcctgcgg
cgcacactcatctccaggctgggcgggccgggaaacgtcgaggacaacatcggcaccgtg
gacgcgttccagggcaacgagcgagatctgatcatctatgggttcactcgcagcaaccgg
accggatcggtcggattcctgagcgaactgcgccgcctcaacgtcgcgatgagccgtacc
cgccggcagctcgtcctcgtcggagatctggacacgcttggcagctccaccgacgccggc
ttcgcgaagctcatcgtggagctgagaacagccctgtctgcggtgggggacctgcgcggc
tcccgggagatcgaggcacgcctgcgcggaaccgtcgaggaaccgcggtga
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