Frankia alni: FRAAL1073
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Entry
FRAAL1073 CDS
T00384
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fal
Frankia alni
Pathway
fal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRAAL1073 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fal03021
]
FRAAL1073 (rpoC)
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL1073 (rpoC)
Enzymes [BR:
fal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRAAL1073 (rpoC)
Transcription machinery [BR:
fal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRAAL1073 (rpoC)
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRAAL1073 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
HisK-N-like
Motif
Other DBs
NCBI-ProteinID:
CAJ59738
UniProt:
Q0RRS9
LinkDB
All DBs
Position
1148726..1152616
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITKVDAEARHRDLPTLEARMGVEKQQLEDKKNADVETRQKRLETD
LAQLEAEGAKGDARRKVRESAEREMRQIRDRAQRKIDDLDRVFDRFKNMKVQDLEPDELL
YRELRDRFGQYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS
AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSTLAEGAVGEGR
AFSSVAEAQMAFDAREIALQARISVRLRDTTPPSDWVPPADWVTGDVFTLETTFGRCLLN
EALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRSGVTVAIE
DVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWTEATNKIAEAMEKNFP
QTNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANFREGLTVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTRIARRGADGVLVRDR
YAETSAYARTLASDAVDEHGEIIVPAGTDAGDVAIGQIIEAGIESVRVRSALTCESRMGV
CAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVVE
LFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSEEIAYPVSRRSRLRVREGDRI
EVGNQIVDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDKHIEIIIRQMLKRV
NVLESGETNLLPGELCERARFESENRRVVESGGQPASARPVLMGITKASLATESWLSAAS
FQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISRYRNIRVEPTEEARAAMYSV
GAYEDGGSVEYGAFGTGSGQAVPLDEFDYRSSGDFR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
ttgctggacgtcaacttcttcgacgaactgcgcatcggtcttgccaccgcggacgacatc
cgtcagtggtcgcacggtgaggtcaagaagccggagacgatcaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcgcatggggcacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgttccgagccggctcggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcaccaaggtcgac
gccgaggcgcgccaccgcgacctgcccaccctcgaggcccgcatgggcgtcgagaagcag
cagctcgaggacaagaagaacgccgacgtcgagactcggcagaagcggctcgagaccgac
ctcgcgcagctcgaggccgagggcgccaagggcgacgcgcggcgcaaggtccgcgagtcg
gccgagcgcgagatgcgccagatccgcgaccgcgcgcagcgcaagatcgacgatctggac
cgggtgttcgaccgcttcaagaacatgaaggtccaggacctggagccggacgagctgctc
taccgcgagctgcgcgaccggttcggccagtacttcgacggcggcatgggcgccgaggcg
ctgcagcggcggctcgccgacttcgacctggccgcggaggccgagtcgctgcgcgagacc
atccgcagcggcaaggggcagaagaaggcccgcgcgctcaagcggctcaaggtcgtctcg
gcgttcctgaacacccgcaactccccgatggggatggtgctcgactgcgttccggtgatc
ccgccggacctgcggccgatggtgcagctcgacggtggccggttcgccacctccgacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtcaccggcccgggtaaccgtccgttgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgggtcgactactccggccggtcggtcatcgtcgtcggtccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggcgaagcggatggtggagcgggcccgc
ccggtcgtctgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctcaaccgg
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtctgcacggcgttcaacgccgacttcgacggcgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgagcaacaacatcctctcgccggcgtccggtcgaccgctggcgatgcccagcctcgac
atggtcaccggggtgttccacctgtcgacgctggccgagggcgccgtcggggaggggcgg
gcgttctcgtcggtcgccgaggcgcagatggccttcgacgcccgcgagatcgcgctgcag
gcgcggatcagcgtccggctgcgcgacaccaccccgccgtcggactgggtgccgccggcc
gactgggtcactggggacgtgttcaccctggagaccacgttcggccgctgcctgctcaac
gaggcgctgccggagggctaccccttcatcaacgcccagctcaacaagaaggcccaggcc
gcgatcgtcaacgacctggccgagcggtacccgaagatccaggtcgcggcgaccctggac
gcgctgaagagcgccggtttctactgggccacccggtccggggtcaccgtcgcgatcgag
gacgtcgtcgcgccgccgaacaaggccgagatcctcgacgactacgagcagcgggccgac
cgggtgcagaagcagttcgaccgcggcttcctgtccgacgaggagcgccgcagcgagctg
gtgcagatctggaccgaggcgaccaacaagatcgccgaggcgatggagaagaacttcccg
cagaccaacccggtctacgtgctggtcaactccggagccgccggaaacatgatgcagatc
cggcagctcgccggcatgcgtggcctggtctccaacccgaagggcgagatcatcccgcgg
ccgatcaaggcgaacttccgcgagggcctcaccgtgctcgagtacttcatctcgacccac
ggtgcccgtaagggtctcgccgacaccgccctgcggaccgccgactccggctacctgacc
cgccggctcgtcgacgtcagccaggacgtcatcgtccgcgaggaggactgcggcaccgag
cgcggcatcctgacccggatcgcccggcgcggcgccgacggcgtgctcgtgcgcgaccgc
tacgccgagacctcggcgtacgcgcggacgctggcctccgacgccgtcgacgagcacggt
gagatcatcgtgcccgccggcaccgacgccggggacgtggcgatcggccagatcatcgag
gccggcatcgagtcggtccgggtgcgttcggcgctgacctgcgagtcccggatgggggtg
tgcgcccagtgctacgggcgttcgctggccaccggcaagctggtcgacgtcggcgaggcc
gtcgggatcgtcgccgcgcagtccatcggcgagccgggtacccagctgacgatgcgtacc
ttccacagcggtggcgtcgccggtgacgacatcacccagggtctgccgcgtgtcgtcgag
ctgttcgaggcccgtagcccgaagggcaaggcgcccatcaccgaggtctccggtcgggtg
aagatcgaggagaccgagaagaccttcaaggtcgtggtggtgccggacgacggcagcgag
gagatcgcctacccggtctcgcggcgctcgcgcctgcgggtccgcgagggcgaccgcatc
gaggtcggcaaccagatcgtcgacggtgccgtcgacccgcacgaggtgctgcgcatcctc
ggcccgcgccaggtccagctccacctggtcgaccaggtccaggaggtgtaccggtcgcag
ggcgtgtcgatccacgacaagcacatcgagatcatcatccgccagatgctcaagcgggtg
aacgtgctggagtccggcgagaccaacctgctgcccggcgagctgtgcgagcgggcccgg
ttcgagtcggagaaccgccgggtggtcgagtccggcggccagccggcctcggctcgtccg
gtgctgatggggatcaccaaggcgtcgctggccaccgagtcgtggctgtcggcggcctcc
ttccaggagacgacccgagtgctcaccgacgcggcgatcaacgcccggtcggactcgctc
gtcggcctcaaggagaacgtcatcatcggtaagctcatcccggccggcaccggcatctcc
cggtaccgcaacatccgggtcgagccgaccgaggaggcgcgcgccgcgatgtactccgtc
ggcgcgtacgaggacggcggcagcgtggagtacggcgcgttcggcaccggctccggccag
gccgtcccgctggacgagttcgactaccgcagctcgggcgacttccgctga
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integrated database retrieval system
