Frankia alni: FRAAL1152
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Entry
FRAAL1152 CDS
T00384
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fal
Frankia alni
Pathway
fal03420
Nucleotide excision repair
fal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FRAAL1152 (uvrD)
03430 Mismatch repair
FRAAL1152 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL1152 (uvrD)
Enzymes [BR:
fal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FRAAL1152 (uvrD)
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FRAAL1152 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
FRAAL1152 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
CAJ59814
UniProt:
Q0RRK4
LinkDB
All DBs
Position
1222034..1224577
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AA seq
847 aa
AA seq
DB search
MSTLFGESPRAFGESAAGVGGGVPYDLFGPAVLAPSAGGDAGGGAPRLDAEGLLDGLNPQ
QRAAVVHIGAPLLVVAGAGSGKTRVLAHRIAYLLAARGVRPGEILAITFTNKAAAEMRER
VGALVGPRARAMWVSTFHSACVRILRSEAKRLGYGSSFSIYDAADAQRLITLVTRDLDLD
PKRHPARGLAAQISNLKNELIDWEAARDRASSHQERTLAEVYAAYQQRLAQANALDFDDL
IMMTVNLLQAFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGQPAHADADADVPGP
GAAADAAVSTVTWASGAVPPAELCVVGDADQSIYAFRGANIRNIVEFEEDFPDAAVILLE
QNYRSTQTILSAANAVIARNNQRKAKRLWSDAGDGEKIVGFVADNEHDEAAFVAEEVDRL
TDAGLARPADVAVFYRTNAQSRVFEEIFVRVGLPYRVVGGVRFYERREIRDLLAYLRVLA
NPNDTVNLRRILNVPRRGIGDRAEAALAGFAEVERIGFAAALERVGEVPGIATRSAKAVR
EFAALLAELRAIEADGPVAVVEAVLERTGYLSELLAEDTVEAQGRVENLQELVGVVQEFT
ERNPQGTLAEFLEQVSLVADADQVPTDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGVF
PHLRTLGDPTQLEEERRLAYVGVTRARSRLYLTRSVVRSAWGQPAYNPPSRFLGEVPDAL
VDWRRLVEAAPEPAARPWGGSGGSGPGGFGSGGFGSGSAGQGAGRAGGGSAPARKPLPNS
PFAGRGRPSARPVLELRQGDRVTHDSFGLGVVVATGGVGDSAEATIDFGADAGTKRLLLR
YAPVEKL
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgagcactctgttcggtgagtccccccgtgccttcggcgagtcggccgcgggcgtcggc
ggtggcgtgccctacgacctgttcggcccggcggtgctcgccccgtccgcgggcggcgac
gcaggcggcggggcacccaggctcgatgccgagggcctgctcgacgggctcaatccgcag
cagcgtgccgccgtggtgcacatcggcgcgccgctgctggtcgtggcgggcgcgggctcg
ggcaagacccgggtgctggcccatcgcatcgcctacctgctggcggcccggggcgtgcgg
cccggggagattctggcgatcacgttcacgaacaaggccgcagccgagatgcgggagcgg
gtcggcgcgctggtgggcccgcgggcgcgggcgatgtgggtcagcacgttccactcggcc
tgcgtgcgcatcctgcggtcggaggcgaagcggctcggctacgggtcctccttctccatc
tacgacgccgcggacgcgcagcggctgatcacgctggtcacccgggatctcgacctcgac
ccgaagcggcacccggcgcgcgggctggccgcgcagatcagcaacctgaagaacgagctg
atcgactgggaggccgcccgggaccgggcgagcagtcaccaggagcgcaccctcgccgag
gtgtacgccgcctaccagcagcggctggcccaggccaacgcgctcgacttcgacgacctg
atcatgatgacggtcaacctgctccaggcgttccccgacgtcgccgagcactaccggcgc
aggttccggcacgtgctggtggacgagtaccaggacaccaaccacgcccagtacgtcctc
gtgcgggaactcgtcggccagcccgcgcacgccgacgccgacgccgacgtgccagggccg
ggggcggcggcggacgcggcggtgtcgaccgtcacgtgggcgtcgggcgccgtgccgccc
gccgagctctgcgtcgtcggtgacgccgaccagtcgatctacgccttccgcggggcgaac
atccgcaacatcgtggagttcgaggaggacttccccgacgccgcggtgatcctgctggag
cagaactaccgttccacccagaccatcctgtccgccgcgaacgcggtgatcgcgcgcaac
aaccagcgcaaggcgaagcggctgtggtccgacgcgggcgacggggagaagatcgtcgga
ttcgtcgcggacaacgagcacgacgaggccgccttcgtcgccgaggaggtcgaccggctc
accgacgcggggctggcccggcccgcggacgtcgcggtgttctaccggaccaacgcgcag
agccgcgtcttcgaggagatcttcgtccgggtcgggctgccctaccgggtcgtcggcggg
gtgcgcttctacgagcgccgcgagatccgcgatctgctcgcctacctgcgggtgctggcc
aacccgaacgacacggtgaacctgcgccgcatcctcaacgtgccgcggcgcggcatcggg
gaccgggccgaggcggcgctcgccggcttcgccgaagtcgagcggatcgggttcgccgcg
gcgctggagcgggtcggcgaggtgccggggatcgccacccgctcggcgaaggcggtgcgc
gagttcgcggcgttgctcgccgagctgcgcgcgatcgaggcggacggaccggtcgccgtc
gtcgaggctgtcctcgaacgcaccggctacctgtccgagcttcttgcggaggacacggtc
gaggcccagggccgggtggagaacctgcaggagctggtcggcgtcgtccaggagttcacc
gagcgcaacccgcagggcactctcgccgagttcctcgaacaggtctcactggtcgccgac
gccgaccaggttcccaccgatgacggctccgacggcgtcgtcaccctcatgaccctgcac
agcgccaagggcctggagttccccgtcgtcttcctcactggcctggaggacggcgtcttc
ccgcatctgcggaccctgggcgaccccacccagttggaagaggagcgccgcctggcctac
gtgggagtcacccgggcccgctcccggctgtacctgacccgctcggtcgtccgcagtgcc
tggggccagccggcgtacaacccgccgtcgaggttcctcggtgaggtgcccgacgcgctg
gtcgactggcgtcgtctcgtcgaggcggcgccggagccggctgcgcgcccctggggcggc
tccggagggtccgggccgggcgggttcgggtcgggcgggttcgggtcgggctcggcgggg
cagggcgccggccgggcgggcggcgggagcgcgccggcccgcaagccgctgccgaactca
ccgttcgccggccgcggccgtccctcggcgcggcccgtgctggagctgcgccagggcgac
cgggtgacccacgacagcttcggcctcggagtcgtcgtcgccaccggtggggtgggggat
tcggccgaggcgacgatcgacttcggtgcggacgccgggaccaagcgcctgctgctgcgc
tacgccccggtcgagaagctctga
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