Frankia alni: FRAAL1923
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Entry
FRAAL1923 CDS
T00384
Name
(GenBank) Ribonuclease E homolog
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fal
Frankia alni
Pathway
fal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRAAL1923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fal03019
]
FRAAL1923
03009 Ribosome biogenesis [BR:
fal03009
]
FRAAL1923
Enzymes [BR:
fal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FRAAL1923
Messenger RNA biogenesis [BR:
fal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FRAAL1923
Ribosome biogenesis [BR:
fal03009
]
Prokaryotic type
rRNA processing factors
FRAAL1923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
CAJ60572
UniProt:
Q0RPG0
LinkDB
All DBs
Position
2087231..2091352
Genome browser
AA seq
1373 aa
AA seq
DB search
MPDDDLTTQTESESTRPAPRRRRAAGRAAGPPPEHPDGSAPDGAVATAAPSVTSDAAGSP
APAAGSGDDAVPPGEPASADAAPARRRTRTSSTTRTRSTRAKAADTSVAATSDPTEAQVA
ATAEPAVSGAVPPDDPATSSGVTSPAVTLPAVTASSETATPAGGSAAAGDVTGEGAEPAA
PARRTRATRSRRAVRDVAAAEIPTPEIPTPAEPVAEADATALPVAGAPSRETAATPPVED
TPKPKRTRARRATSGPVTAPAVPPAAEATAAATEPAAPGAATESAAAEAPASEPSAAEPA
PVAATEPTEAGSGEPTRTRATRTRTTRRRATAAKGAPEAASGSAPAAEAPVAGSSAADVP
PGPVPASEVSAEENPTVAVAEPSAVAGSSAVAEPPAVESPAVQPSAVQPSVVDAVQPLGV
FEAPATGTPFGSAPVSTPATGSAPAEGQAPAEGQAPAEDEPAQPEPAAAESAPAGTRTRT
RTRRVTAPTWAGIGDEPPAEPVSRPAARRPVAMVTFQAPEPAAAEAPRWRRADAVGADEA
GPAVEPAPTAAAERPVEAEPADDDIDIDTVVEELAAVDEDGEFDEDDQAGGSGSTRRRRR
GRRGRGRARGDEDGTETDVEDGAGETDEAPHAAAAADAADRPGRGGELEPAAADGGEAAE
RAEDGDDDDEDDRAGGSRRRRRRRRRAGGDEPAVVDDPPNTVVHVREVRRDEDLVRGLSG
STRLEAKRQRRREGRDSGRRRPPIVTEAEFLARREAVERRMIVRHAGDRTQIAVLEDSVL
VEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVLYAGEVNYDASGLDGRP
RKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPDGQNAGISRKLPDTER
ARLKSILKKITPEDGGVIVRTAAEGASEAELERDIERLAAQWEDIQRRAKKASAPSLLYG
EPDLVVRVIRDIFNEDFTELVVQGSGEAATIEEYIDAVAPDLRPRIRRYTGSGDVFVDYR
VDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKGGNLEETVTKNNLEAAEE
IVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTR
KRVGQGLLEAYSEPCVHCNGRGVLIHLNGGGHAHQPAASAASAGSGAGQSEPAAVGSGSG
GSGRRSRGAATRAAGGPALVAAASVGAAVGAAEVADGVVSAADLGQPAAAGNDDAGVVAG
AAGGAPDSPSAPTGAVADASAVGPIVTANGNGHVPAGAVTVAAPAAPLAQSGGGAATPPV
YANTDDPDSLATADSGGAAGKPVRSRRRRASRPVSKPAESLESVPPSAESTGA
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacgatgatctgaccactcagaccgaatccgaatccactcgcccagcgccgcgt
cggcgcagggccgcagggcgggccgccggtccgccccccgagcacccggacgggtccgct
cccgacggcgccgtggcaaccgccgccccgagcgtgaccagcgacgcggccggctccccg
gcccccgcggccggttccggcgacgacgccgtaccgcccggcgagccggcgtccgccgac
gcagcgcccgcccgccggcgaacgaggaccagctccacgacgcgcacccgctcgacccgg
gcgaaggcggccgacacgagcgttgcggccacctccgacccgaccgaggcgcaggtggct
gccacggccgagccggccgtctccggggccgtcccgcccgacgacccggccacgtcgtct
ggcgtcacgtcgccggccgtcacgctgccggccgtcaccgcctcgtccgagaccgccacg
cccgccggtggcagcgccgctgccggtgacgtcaccggcgagggtgccgagccggccgcg
ccggcccgtcgtacccgggcgacccgcagccgccgcgccgtccgtgacgtcgccgcggcg
gagatcccgaccccggagatcccgaccccggccgaacccgtggccgaagccgacgcgaca
gctctgcctgtcgccggagcgccgtccagggagaccgcggccacgccgcctgtcgaggac
acgccgaagcccaagcggacccgtgcccggcgggccacgtccggcccggtgacggcacct
gccgtaccccccgccgccgaggccaccgccgctgcgacggaacccgccgcccctggcgct
gccacggaatccgcggcggccgaggcccctgcctccgagccgtcggctgccgaaccggcg
ccggtggccgccaccgagcccaccgaggccggaagcggggagcccaccaggactcgagcc
acccgtacccggaccaccaggcgtcgcgcgacggccgcgaagggcgcccccgaggccgca
tccggttccgcgccggcggcggaggcgccggtcgccggatcttcggctgccgacgttccc
cccggcccggtcccggcgagcgaggtttcggccgaggagaaccccacggtcgccgtcgcc
gagccgtccgcggtcgctggatcgtcggccgtcgccgagccacccgcagtcgagtcgccc
gccgtccagccgtccgccgtccagccgtccgtcgtcgacgccgtccagccgctcggggtc
ttcgaggccccggccacgggcacgccgttcggttcggctcccgtgtccacacccgccaca
ggttctgcacccgccgagggacaggcacccgccgagggacaggcaccggccgaggacgag
ccggcgcagcccgaaccggccgccgccgaatcggcgccggccggcacccgcacccggacg
aggacccggcgggtcaccgccccgacctgggccggcatcggcgacgagccgcccgccgag
cccgtctcccgcccggcggcccgccgtccggtggcgatggtgaccttccaggcgccggag
ccggcggccgccgaggcgccgcgctggcggcgtgccgacgccgtcggtgcggacgaggcg
ggacccgccgtcgagccggcgccgaccgccgccgccgagcggcccgtcgaggcggagcct
gccgacgatgacatcgacatcgacaccgtcgtcgaggaactcgccgccgtcgacgaggac
ggcgagttcgacgaggatgaccaggccggcgggtcgggttccacccgccgccggcggcgt
ggccggcggggtcgtggccgggcccgcggcgacgaggacggcaccgagaccgacgtcgag
gacggcgccggcgagaccgacgaggccccgcacgccgcggcggccgcggacgccgccgat
cgtcccgggcggggcggcgagctggagcccgccgccgcggacggcggcgaggctgcggag
cgcgccgaggacggcgacgacgacgacgaggacgatcgcgcgggcggttcccgccggcgt
cggcggcggcgtcggcgtgccggcggcgacgagccggcggtggtcgacgacccgccgaac
acggtcgtgcacgttcgggaggtccgccgggacgaggacctggtccgcggcctgagcggc
tcgacccggctggaggccaagcgccagcggcgccgtgagggccgcgacagcggccggcgc
cgcccgccgatcgtcaccgaggccgagttcctcgcccgccgcgaggcggtcgagcgtcgc
atgatcgtgcgccacgccggcgaccgcacccagatcgccgtcctcgaggacagcgtgctg
gtcgaacacttcgtcacccgggcgagctcggcgtcgtacgcgggcaacgtctacctcggc
cgggtgcagaacgtgctggccagcatggaggcggcgttcgtcgacatcggcaagggccgc
aacgccgtcctgtacgccggcgaggtcaactacgacgcctccgggctcgacggccgtccc
cgcaagatcgagcaggtgctcaagtcggggcagtcggtcctggtccaggtctccaaggac
ccgatcggccacaagggcgcccggctcaccagccagatcagcctgccggggcgctacctc
gtgtacgtcccggacgggcagaacgccggcatcagccgcaagctgcccgacaccgagcgg
gcgcggctcaagagcatcctcaagaagatcacacccgaggacggcggcgtcatcgtgcgt
accgccgccgagggtgccagcgaggccgagctcgagcgtgacatcgaacggctggccgcg
cagtgggaggacatccagcgccgcgccaagaaggcatccgcgccgtcgctgctctacggc
gagccggacctcgtcgtgcgcgtgatccgcgacatcttcaacgaggacttcaccgagttg
gtcgtccagggctccggcgaggccgcgacgatcgaggagtacatcgacgccgtcgccccc
gacctgcgcccgcgcatccgccgctacaccgggtccggggacgtcttcgtcgactaccgg
gtggacgagcagctcgccaaggcgctggaccgcaaggtctggctgccgtcgggcggatcg
ctggtcatcgaccgcaccgaggcgatgacggtcatcgacgtcaacaccggcaagttcacc
ggcaagggcggcaacctcgaggagaccgtcaccaagaacaacctggaggccgcggaggag
atcgtccgccagctccggctgcgggacatcggcgggatcatcgtcatcgacttcatcgac
atggtcctggagagcaaccgggagctggtcctgcgccggctcaccgagtgcctcgggcgc
gaccgcacgcgccaccaggtcgcggaggtgacgagcctcgggctggtccagatgacccgc
aagcgggtgggccagggcctgctggaggcatacagcgagccgtgcgtgcactgcaacggc
cgcggcgtgctcatccacctcaacggcggcgggcacgcccaccagccggccgcctccgcc
gcctccgccggctccggcgcgggccagtccgaaccggccgcggtcggatccgggtccggc
gggtcgggccggcgctcgcgcggcgccgccacccgtgccgccgggggccccgcgctcgtc
gcggccgcctcggtcggtgctgccgtcggggccgccgaggtggcagacggcgtcgtgtcg
gcggcggacctcggccagccggccgcggcgggcaacgacgacgccggcgtggtggccggc
gctgccgggggtgcccccgactcgccgtcggcgcccaccggcgcggtggcggacgccagc
gctgtcggaccgatcgtgacggcgaacggcaacggccacgttcccgcgggagcggtgacg
gtggccgccccggcggcccccctcgcacagagcggtggtggggccgcgacaccgcctgtg
tacgcgaataccgacgaccccgacagcctcgccaccgccgacagcggtggggccgccggc
aagcccgtccggagccggcggcgccgggcgtcccgtccggtgtcgaagccagccgagtcg
ctggagtccgtgccgccctcggcggagtccaccggcgcctga
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