Frankia alni: FRAAL4186
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Entry
FRAAL4186 CDS
T00384
Name
(GenBank) Putative exodeoxyribonuclease V
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
fal
Frankia alni
Pathway
fal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FRAAL4186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL4186
Enzymes [BR:
fal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FRAAL4186
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FRAAL4186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
HHH_5
Viral_helicase1
AAA_11
AAA_22
PIF1
Helicase_RecD
TraI_hel_assoc_N
AAA_16
NPHP3_N
TrwB_AAD_bind
DEAD
HHH_2
PhoH
nSTAND3
AAA
ATPase_2
AAA_10
P-loop_TraG
HTH_IclR
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
CAJ62828
UniProt:
Q0RI44
LinkDB
All DBs
Position
4546467..4548737
Genome browser
AA seq
756 aa
AA seq
DB search
MTTARSSADAARQAVVEGVLERITFVSEETGYTIARLATERSGPDLLTVVGPLLGAQIGE
SLRLTGQWGSHPRYGRQFQVHSYTTVLPATIQGIRRYLGSGLIKGIGPAMAERMVAHFDT
DILRIIEEEPARLIEVRGLGPKRTKKIADAWEEQKAIKEVMVFLQGVGVSTSLAVKIYKK
YGDQSIGVVRTQPYRLATDVWGIGFRTADTIAQAVGIPHDSPERIKAGLQYTLSQAADDG
HCFLPAPNLITDAAKILEVERELIGPCLDQLAADEGVIREGVPAGDATVPAVYLVPFHRA
ETSLAGGLLTLLTCAEERLASFADVDWDRALGWLRGRTGQDLADEQAEAVRLALTRKVAV
LTGGPGCGKSFTVRSVVELARARKARVVLVAPTGRAAKRLAELTGHEASTVHRLLELQPG
GDPRYDRDNPLDADLVVVDESSMMDVILANKLVKAVPPGAHLLLVGDVDQLPSVGAGEIL
RDLLAADAIPRVRLTRIFRQAQQSGIVVNAHRINAGTPPQLTGFSDFFWFTCEPADDSGL
HPAEETAKMVVDIVARRIPQRFGLDPRRDVQVLAPMHRGPAGAGNLNLLLQEALTPAREG
APERRYGGRVFRVGDKVTQLRNNYDKGKAGVFNGTVGVVTAINTEDQTLTMLSDEDESLV
YDFSELDELAHAYAVSIHRSQGSEYPAVVLPLTTSSWMMLQRNLLYTGVTRAKKLVVLVG
SRRALAAAVRTPGAGRRHTALTHRIAPSVEPAAPRT
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
gtgaccactgcccgttcttctgctgacgccgcgcgtcaggcggtggtggagggggtgctg
gagcggatcaccttcgtcagcgaggagaccggctacaccatcgcccggctggccaccgag
cggtccggtccggacctgctgacggtggtcggcccactgctgggtgcgcagatcggggag
agtctgcggctgaccgggcagtggggtagccatccccggtacggcaggcagttccaggtg
cactcgtacaccacggtgctgcccgcgacgatccagggcattcgccgctacctgggctcg
gggctgatcaaggggatcgggccggcgatggccgagcggatggtcgcgcatttcgacacc
gacatcctgcggatcatcgaggaggagccggcccggctgatcgaggtccgcgggctggga
cccaaacgcaccaagaagatcgccgatgcctgggaggaacagaaggcgatcaaggaggtg
atggtgttcctgcagggagtgggggtgtccacctccctcgcggtgaagatctacaagaag
tacggcgaccagtccatcggcgtcgtgcgcacacagccctaccggctcgccaccgacgtg
tggggaatcgggttccggaccgccgacaccatcgcccaggcggtcggtatcccccacgac
agccccgaacggatcaaggccggcctgcagtacaccctctcgcaggccgccgacgacggg
cactgcttcctgcccgccccgaacctgatcaccgatgcggcgaagatcctcgaggtcgag
cgggaactgatcggcccgtgcctggaccagctcgccgccgacgagggtgtgatccgcgaa
ggcgtccccgccggggacgccaccgtcccggcggtctacctggtgccgttccaccgcgcg
gagacgtccctcgccggcgggctgctgacgctgctcacctgcgccgaggagcggttggcg
tcgttcgcggacgtggactgggacagggcgctgggctggctgcggggccggaccggtcag
gacctcgccgacgagcaggcggaggcggtcaggctcgcgctcacccgcaaggtggcggtg
ctcaccggcgggccgggctgcggcaagagcttcaccgtccggtcggtggtggaactcgcc
cgggcccgcaaggcccgcgtggtgctggtcgcgccgaccgggcgggccgccaaacggctg
gcggaactcaccggccacgaggcctccaccgtccaccggctgctggagctgcaacccggc
ggcgaccccagatacgaccgggacaacccgctcgacgccgatctggtggtcgtcgacgaa
tcctcgatgatggacgtcatcctggccaacaagctggtcaaggcggtcccgccgggggcg
catctgctgctggtcggtgacgtggaccagcttccctccgtcggcgccggggagatcctg
cgcgatctgctcgccgccgacgcgatccccagggtccggctgaccaggatcttccggcag
gcccagcagtccggcatcgtcgtcaacgcccaccggatcaacgccggaacacccccgcag
ctgaccggtttcagcgacttcttctggttcacctgcgagccggccgacgactccggcctg
catccggcggaggagaccgcgaagatggtggtggacatcgtcgcccgccggatcccgcaa
cgtttcgggctcgatccccgccgcgacgtgcaggtgctggcgccgatgcaccgcgggccc
gccggagccggaaacctcaacctgctcctgcaggaggccctcaccccggcccgcgaaggc
gcacccgagcgccgctacggcgggcgggtgttccgcgtcggcgacaaggtcacccagctg
cgcaacaactacgacaagggtaaggccggggtgttcaacggcaccgtcggcgtcgtcacc
gccatcaacaccgaggaccagacgctgaccatgctctccgacgaggacgagagcctcgtc
tacgacttctccgaactcgacgaactcgcccacgcctacgccgtcagcatccaccgctcc
cagggcagcgaataccccgccgtcgtccttcccctcaccacctcctcctggatgatgctg
caacgcaacctgctctacaccggcgtcacccgcgccaagaagctcgtcgtcctggtgggc
tcccgcagggcgctcgcggccgcggtccgcaccccgggcgccgggcgtcgccacaccgcc
ctcacccaccgcatcgccccgtcggtcgagcctgcggcgccgcggacctga
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