Frankia alni: FRAAL4407
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Entry
FRAAL4407 CDS
T00384
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fal
Frankia alni
Pathway
fal03030
DNA replication
fal03430
Mismatch repair
fal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRAAL4407 (dnaE)
03430 Mismatch repair
FRAAL4407 (dnaE)
03440 Homologous recombination
FRAAL4407 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fal03032
]
FRAAL4407 (dnaE)
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL4407 (dnaE)
Enzymes [BR:
fal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FRAAL4407 (dnaE)
DNA replication proteins [BR:
fal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FRAAL4407 (dnaE)
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FRAAL4407 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
CAJ63049
UniProt:
Q0RHH7
LinkDB
All DBs
Position
4789402..4792935
Genome browser
AA seq
1177 aa
AA seq
DB search
MSNSFVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATAAG
VKPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFRLN
SRASIEGHYIKWPRMDQEIIAEHADGLMATTGCPSGIVQTRLRLGQYDAALQAAATYQEI
FGKENFFCEIMDHGLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALLCVQ
TASTVANPSFQFEGSGYFLKSAEEMYGIDSSDIWQEGCETTLLIAERVDPTGMFAKHNLM
PRFPVPDGETEESWFRAETWAGMDRRFPQGFDDEHRERVEYEIRVILQMGFPSYFLVVAD
FIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPERVSMPDIDIDF
DERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYAVGDRITKAMPPA
VMGKDIPLGGIFDPKHPRFSEAGEIRGLYESDADVKKVIETAKGLEGLIRQAGVHAAGVI
MSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVMDDAVRNVEANR
GITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMRPDNFEDISAVLALYRP
GPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIVYQEQVMAIAQKVAGYS
LGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLWDILVPFSDYAFNKAHT
AGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIRVLPPDVNSSNA
DYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDFLDKVDAVVCNKRTIES
LIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFALDADDDPGAAPVFGVQ
EFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARADCSIAALTGGEYADGSTVTI
AGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFPQTYEVCSTQLAEDAVVIVRGRLDK
REDTPRLIASELTVPDLSEAALSPPVVITMSAARVNPPTVERLREVLGTHPGTTEVHLRL
QTPGQTTVLRLDDAYKVQRTPALMGDLKALLGAAAVA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaactccttcgtccatctgcacgtccacaccgagtactcgatgttggacggggcg
gctcggctgaaggacatgttcagcgaggtctcacgccagcagatgccggcggtcgcgatc
accgaccacggctacatgtacggggcgtacgacttccacaagcaggccaccgccgcgggc
gtgaagccgatcatcggctgcgaggcgtacgtcgcccccgagtcgcgcctgctcaagcag
cgggtgcgctggggcgagccgcaccagaagagcgacgacgtctccggtggcggctcctac
acccacatgacgatgtgggcgcgcaacgccgacgggctgaagaacctgttccggctgaac
tcgcgggcgtcgatcgagggccactacatcaagtggccgcggatggaccaggagatcatc
gccgagcacgccgacgggctgatggcgacgaccggctgcccgtccggcatcgtgcagacg
cggctgcgcctgggccagtacgacgccgccctgcaggccgccgccacctaccaggagatc
ttcggcaaggagaacttcttctgcgagatcatggaccacgggctcgacatcgagcgccgg
gtccgcgacggcctggtcgacatcgcccgcgcgctggacatgcgcttcgtcgtcaccaac
gactcgcactacacctacgagcacgagcgcgacgcccacgccgcgctgctgtgcgtgcag
acggcctcgacggtggccaacccgtcgttccagttcgagggctcgggctacttcctcaaa
agcgccgaggagatgtacgggatcgactcctcggacatctggcaggagggttgcgagacc
acgctgctgatcgccgagcgggtcgacccgaccggcatgttcgccaagcacaacctgatg
ccccgcttcccggtgcccgacggcgagaccgaggagagctggtttcgcgccgagacctgg
gcgggcatggaccggcgcttcccccaggggttcgacgacgagcaccgcgagcgggtcgag
tacgagatcagggtcatcctgcagatggggttcccgtcgtacttcctcgtcgtcgcggac
ttcatcatgtgggcgaaggcccagggcatcccggtcgggccgggccgcggcagcgccgcc
gggtcgatggtcgccttcgcgctcggcatcaccgacctcgacccgatcccccactcgctg
ctgttcgagcgcttcctcaaccccgagcgcgtgtccatgcccgacatcgacatcgacttc
gacgaacgtcgtcgcggcgacgtgatccgttacgtgaccgagcgctggggcgacgaccgc
atcgcccagatcgtcaccttcggcacgatcaaggccaaggccgcgatcaaggactcgtcg
cgggtgctcggctacccgtacgccgtcggcgaccggatcaccaaggcgatgccgccggcc
gtgatgggcaaggacatcccgctgggcgggatcttcgacccgaagcacccccgtttcagc
gaggccggggagatccgcggcctgtacgagtccgacgcggacgtcaagaaggtcatcgag
acggcgaagggcctggaagggctgatccgccaggccggggtgcacgcggccggcgtcatc
atgtccgccgagccgatcatcgaccacatcccggtgtggcgccgcgacgccgacggcgcg
atcatcacccagttcgactacccgacgtgcgagacgctcggcctgctcaagatggacttc
ctgggcctgcgcaacctcaccgtcatggacgacgcggtgcgcaacgtcgaggccaaccgg
ggcatcacgatcgacctgctggggctcaccctcgacgatcccgccgcctacgagctgctc
ggccgcggcgacaccctgggagtgttccagctcgacggcgggccgatgcgctcgctgctg
cggatgatgcgcccggacaacttcgaggacatctccgccgtgctcgccctgtaccgaccg
gggccgatgggcgcgaactcgcacatcaactacgcgctgcgcaagaacggccagcaggag
atcaccccgatccacccggagctgtccgaggcgctcgccgacatcctcgacacgacctac
ggcctgatcgtctatcaggagcaggtcatggcgatcgcgcagaaggtcgccggctactcc
ctcggcggcgcggacctgctgcgccgggcgatgggcaagaagaagaaggagatcctcgac
aaggagttcgtccccttctccgaggggatgaagaacagcgggtactccgaggcggcgatc
aaaacgctgtgggacatcctcgtcccgttctccgactacgcgttcaacaaggcgcacacc
gccggctacgggctggtctcctactggacggcctacctcaaggcgaactatccggccgag
tacatggccgcgctgctgacgtccgtgcgtgacgacaaggacaagagcgcgatctacctc
aacgagtgccgccggatgggcatccgggtgctcccaccggacgtcaacagctccaacgcc
gactacaccgcgcacggcgcggccgagatccgggtgggcctggccgcgatccgcaacgtc
gggacgaacgtcgtcgagtcgatcgtccgcacgcggaagtcgaagagccgcttcgtctcc
ttcccggacttcctcgacaaggtcgacgcggtggtctgcaacaagcgcaccatcgagtcg
ctgatcaaggctggcgcgttcgacgcgcttgggcacacccgccgaggcctggtcgaacgg
cacgagcaggccgtcgacgcggtgatgggggtgaagaagaagaacgccgagggccagttc
gacctgttcgccctcgatgccgacgacgacccgggcgcagcgcccgtcttcggcgtccag
gagttctccgaccaggagtgggacaaggcggtcaagctgtcccacgagcgggagatgctc
gggctctacgtctccgaccatcccctgcgcgaggtcgagcacatcctgaccgcgagggcg
gactgcagcatcgccgccctgaccggcggggagtacgcggacgggtccaccgtgaccatc
gccgggatcatctccagcctgcagcgcaaggtgaccaagcagggcaagctgtgggcgctg
accaccgtcgaggacctcgcgggcgggctggaggtgatgttcttcccgcagacctacgag
gtgtgctccacccagctcgccgaggacgccgtcgtcatcgtccgggggcgcctggacaag
cgggaggacaccccgcgcctgatcgcctccgagctgaccgtgccggacctcagcgaggcg
gcgctcagccccccggtagtgatcaccatgtccgccgcccgggtgaacccgccgacggtg
gaacggctgcgcgaggtcctcggcacccaccccgggacgaccgaggtccacctgcggctg
cagacccccggccagaccaccgtgctgcgcctcgacgacgcctacaaggtccagcgcacc
cccgcgctgatgggtgatctcaaggccctgctcggcgccgccgcggtcgcctga
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