Frankia alni: FRAAL5108
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Entry
FRAAL5108 CDS
T00384
Name
(GenBank) putative DNA-directed DNA polymerase
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fal
Frankia alni
Pathway
fal03030
DNA replication
fal03430
Mismatch repair
fal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRAAL5108
03430 Mismatch repair
FRAAL5108
03440 Homologous recombination
FRAAL5108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fal03032
]
FRAAL5108
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL5108
Enzymes [BR:
fal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FRAAL5108
DNA replication proteins [BR:
fal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FRAAL5108
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FRAAL5108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CAJ63748
UniProt:
Q0RFJ5
LinkDB
All DBs
Position
5541363..5543105
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AA seq
580 aa
AA seq
DB search
MPAHRQASLDELGRPLSDLTFVVVDLETTGTSAATSEITEIGAVRVRGGEVLAEMSTLVR
PSAGIPPMVSVITGITDAMVATAPAEAEVVPTFLEFARGAVLVAHNAPFDLGFLRAAAQR
CGYPPPAWEHLDTLRIARRLVSRDEAPDCRLASLARLFRSSTEPCHRALADARATVDVLH
GLFERLGNAGVRTLEELHEYSARVSPAQRRKRYLADGLPTGPGVYIFRDADGRALYVGTS
RSVRSRVRTYFTASEPRTRMAEMVALAERVDAIGCAHALEAEVRELRLIAEHKPPYNRRS
RFPERTVYLKLTDEPFPRLSRVRAARDEATYLGPFASTRGADDAADALLAAVPLRQCTGR
LSPRARRPACALADLGRCGAPCDGREDVAAYARHVAAARAAITGDPGPVIAASTRRIDRL
AGERRYEEAAVHRDRMVSFVRAAARGQRLAALTRIPQLVAAAPTAQAGWDLAVVRHGRLV
SAANVAPGIDPRPWVDAAVASAETVRPQPGPAPCASVEETERIARWLAGSGVRLVRLDGE
WSWPAAGASRDALRYAELHRSPDSPEQAPGRRAEGERPRR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcgcatcggcaggccagcctcgacgagctcggccggccgctgtccgatctgacg
ttcgtcgtggtcgacctggagacgacggggacctcggcggcgaccagcgagatcaccgag
atcggcgcggtgcgggtgcgtggcggcgaggtgctcgcggagatgtccaccctggtccgc
ccgagcgcaggtatcccgccgatggtctcggtgatcaccgggatcaccgacgcgatggtg
gcgacggcccccgcggaggccgaggtggtgccgacgttcctggagttcgcccgcggtgcc
gtgctggtcgcccacaacgcgccgttcgatctcggcttcctgcgggccgcggcgcagcgc
tgcggctatccgccacccgcctgggagcatctcgacaccctccgcatcgcgcggcggctg
gtcagccgggacgaggctcccgactgccggctggcctcgctggcccggctgttccgcagc
tcgaccgagccctgccaccgggcgctggcagacgcccgcgccacggtggacgtgctgcac
gggttgttcgagcgcctcggcaacgccggcgtgcgcacgctggaggagctgcacgagtac
agcgcccgggtctccccggctcagcggcgcaagcggtacctcgccgacgggctgcccacc
ggcccgggcgtctacatcttccgggacgccgatggacgggccctctacgtcggcacctct
cggtcggtccggtcccgggtgcgcacgtacttcacggcgagtgagccccgcacccggatg
gcggagatggtggcactggccgagcgggtggacgccatcggctgcgcgcacgccctggag
gccgaggtgcgggagctgcggctgatcgcggagcacaagccgccgtacaaccgacgctcc
cgcttcccggaacgcaccgtgtacctcaagctcaccgacgagccgttcccccggctttcc
cgggtgcgcgccgcgcgggacgaggcgacctacctcggtccgttcgccagcacccggggc
gccgacgacgcggccgacgcgctgctcgccgccgtgccgctgcgccagtgcaccggccgg
ctctcgccacgcgcccgccgccccgcctgcgccctggccgacctgggccggtgcggggca
ccctgcgacggccgggaggacgtcgccgcctacgcccgccacgtcgccgccgcccgggcg
gccatcacgggcgatccggggccggtcatcgcggcgtcgacgcggcgtatcgaccgcctg
gccggcgagcggcgctacgaggaggcggccgtccaccgcgaccggatggtgtcgttcgtc
cgcgccgcggcccgcggtcagcggctggccgcgctgacccgcatcccgcagctcgtcgcg
gcggcgccgaccgcgcaggccggctgggacctggcggtggtccggcacggccggttggtg
tcagcggcgaacgtggctcccggcatcgacccgcggccctgggtcgacgccgcggtcgcc
agcgccgagacggtgcgaccacagccggggcccgcgccgtgcgcctccgtcgaggagacc
gagcggatcgcccgctggctggccggctccggggtgcggctcgtgcgcctcgacggcgag
tggagctggccggcggcgggtgccagccgcgacgcgctgcgctacgccgagctccaccgt
tcccccgacagcccggagcaggcgcctggccggcgcgccgagggcgagcgtccccgccgc
tga
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