Frankia alni: FRAAL5622
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Entry
FRAAL5622 CDS
T00384
Symbol
hrpA
Name
(GenBank) ATP dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fal
Frankia alni
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fal03019
]
FRAAL5622 (hrpA)
Enzymes [BR:
fal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FRAAL5622 (hrpA)
Messenger RNA biogenesis [BR:
fal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FRAAL5622 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
HA2_N
NACHT
AAA_16
PhoH
ResIII
ABC_tran
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAJ64255
UniProt:
Q0RE57
LinkDB
All DBs
Position
6068350..6072999
Genome browser
AA seq
1549 aa
AA seq
DB search
MEGPPVNPPPSADPTRVDREPADQDGTPRVGELSARLAELGPGDAHRLGRRLADTRRTRE
PAARQRALRAIAADTDRAAARVARRRANVPALSYPEILPVTQRKDEILAAIRDHQVVIIA
GETGSGKTTQLPKICLELGRGVRGMIGHTQPRRIAARTVADRIAEELGTPSPQAGGVVGY
QTRFTDQVHDDTLVKLMTDGILLAEISSDRSLRRYDTLIIDEAHERSLNIDFILGYLRSL
LPRRPDLKVVITSATIETARFSAHFGDAPVIEVSGRTYPVEVRYRPLVPGARDTDPNGPN
DPNAAEPDARPAEEPAGGRGTGRGRASSGGSGSGGSGSGGSGPGGRRGQPAEPERDQTQA
ISDAVDELCAEGPGDILVFLSGEREIRDTAEALAREQRPNTEIVPLYARLSAGEQHRVFQ
PHTGRRVVLATNVAETSLTVPGIRYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRK
GRCGRTADGICIRLYSEEDFAGRPEFTDPEILRTNLASVILRMADLGLGDMATFGFLDPP
DPRQISDGELLLTELGAFDAGGTGPGRPVADAPAPDGTGASGTDAGAPVQGGTGTSGAGA
SAARAGGTGTGRRITPIGRRLAQIPVDPRLARMVLAGDEQGCLREVLVIAAALAIQDPRD
RPVEHQQAADERHARFADPTSDFLAYLNLWNYLRDARGELSANQFRRMCRTEFLNYLRIR
EWQDVHGQLAAVARGLGLNADARAGDRAFRDNRDGRDGRDGTAGSRGAGGRNGKGGGAGR
DGAGGGAGAGGGAGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGADGAGGAADP
RAVHRALLTGLLSHIGRYDPERREYAGARGSRFMLWPGSAMARGRGRADRAAAADAAIDA
TGPDAPRQRPSGPPAWVMAAELVETSRLWGRTAARIDPDWIEPLAGHLVHRSYSEPRWSR
RQGAVLADERVTLYGVPIVAGRPVQYSRIDPALCRELFIRHALVEGDWQTRHEFFQHNQR
LLADAEELEHRARRRDIVVDDEVLFGFYAERIPADVVSVRHFDAWWRKARRGSPDLLDFP
RSLLVSAGAGDVRETDYPDVWRLGELALPLSYQFEPGAAADGVTVHIPLPVLNQVSAEGF
EWQVPGLREELVTALIRGLPKVVRRSFVPAPNYARAVLTHLTPGQAPLLVAVEHELRRMG
GPEIPRDSWSLAAVPDHLRITFRVEDARGAVLAEGKDLDAIKQRLRPRTREAVAAAADGV
ERTGLRSWDGVGSLPRVVELRRGGHVVKAFPALVDEGSTVAVRATDTETEQRQAMWAGTR
RLVLLGVASPIRGLNGRLSNAAKLALSHNPHRDAADLLDDCVRAAADRLITAAGGPAWDE
AGFTALLAAVRAGLPEASFAVVREVQQVLALSHTVDLALRDLRAPALAASVADARGQLDA
LIYRGFVTDTGADRLADLARYLTALERRLERLPRDPGRDRINTATVGRAREAYRELLATV
PAGREPGEEIRRIRWMLEELRVSLFAQNLRTPYPVSEERVYRAIDTLLG
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
gtggaaggaccgccagtgaatcctccgccgtccgcggaccccacccgcgtggaccgggag
ccggccgaccaggacgggacgccgcgggtcggtgagctctccgcccggctggcggagctg
ggacccggcgacgcccaccggctcggtcggcgtctcgccgacacccggcgcacccgtgag
cccgccgcccgccagcgcgctctgcgcgccatcgccgcagacaccgatcgggcggccgcg
cgggtcgcccgccggcgggcgaacgtgcctgcgctcagctaccccgagatcctgccggtg
acgcagcgcaaggacgagattctcgccgcgatccgcgaccatcaggtcgtgatcatcgcc
ggggagaccggctccggcaagaccacccagctaccgaagatctgcctggaactcggtcgt
ggggtccgcgggatgatcggccacacccagccgcggcggatcgccgcgcgcaccgtcgcc
gaccgcatcgccgaggagttgggcaccccctcgccgcaggccggcggggtcgtcggctac
cagacccggttcaccgaccaggtgcacgacgacaccctcgtcaaactcatgaccgacggc
atcctgctggccgagatctcctcggaccggtcgctgcgccgctacgacacgctgatcatc
gacgaggcccacgagcgcagcctcaacatcgacttcatcctcggctacctgcgctcactg
ctcccccgccggcccgatctcaaggtggtcatcacctccgcgacgatcgagacggcccgg
ttctccgcgcacttcggcgacgcgcccgtcatcgaggtctccggacgcacctacccggtc
gaggtgcgctaccgcccgctggtgccaggcgcccgcgacaccgacccgaacggcccgaac
gacccgaacgcggccgaaccggatgcgcggcctgccgaggagccggccggcggccgcggg
accggccggggccgcgccagcagcggcggcagcggcagcggcggcagcggcagcggcggc
agcggcccgggcgggcgccgcgggcagccggccgagcccgaacgggatcagacccaggcg
atcagcgacgcggtcgacgagctgtgcgccgagggccccggcgacatcctggtgttcctc
agcggggaacgcgagattcgggacaccgccgaggcgcttgcccgcgagcagcggccgaac
acggagatcgtgccgctctacgcccggctgtccgccggcgagcaacatcgggtcttccag
ccgcacaccggacggcgggtggtgctggcgaccaacgtcgcggagacctcgctgacggtc
cccggcatccggtacgtcatcgatcccggcaccgcgcgcatctcccgttacagccatcgg
acgaaggtgcagcgcctgccgatcgagccggtctcgcaggcgtcggcgaaccagcgcaag
ggccggtgcgggcggaccgcggacggcatctgcatccggctctacagcgaggaggacttc
gccggccggcccgagttcaccgacccggagatcctgcggacgaacctggcctcggtgatc
ctgcggatggccgatctcgggctgggcgacatggccaccttcggcttcctcgacccgccc
gacccgcgccagatcagcgacggagagctgctgctcaccgagctgggagcgttcgacgcg
ggcggcaccggaccaggcaggcccgtcgcggacgcgcccgccccggacgggaccggagcg
agcgggacggacgcgggcgcgcctgtccagggcggtaccggaacgagcggggccggcgcg
agcgctgccagggcgggcggtaccggtacgggccggcggatcaccccaatcgggcggcgc
ctcgcgcagatccccgtggatccccggctggcccgcatggttctcgccggcgacgagcag
ggctgcctgcgggaggtgctggtcatcgcggcggcgctggccatccaggatccgcgggac
cgtccggtcgaacaccagcaggccgccgacgagcggcacgcccggttcgcggacccgacc
tcggacttcctcgcctacctgaacctgtggaactacctgcgtgacgcccgcggcgagctg
tccgccaaccagttccggcggatgtgccggaccgagttcctcaactacctgcgcatccgc
gagtggcaggacgtccacggccagctcgccgccgtggcccgtggcctgggcctgaacgcc
gacgcccgcgccggcgaccgcgccttccgtgacaaccgtgacggcagggacggcagggac
ggcacagccggcagccgcggtgccggcggcaggaacggcaagggcggcggagctggcagg
gacggagcaggtggcggagctggcgcaggtggcggagctggcggagctggcgcaggtggc
ggagctggcgcaggtggcggagctggcgcaggtggcggagctggcgcaggtggcggagct
ggcgcaggtggcggagctggcgcgggaggcgcggacggcgcaggtggcgcggcggatccg
cgggcggtgcaccgggcactgctcacgggcctgttgtcgcacatcggccggtacgacccg
gaacgccgcgagtacgccggggcccgcggcagccggttcatgctgtggccgggctcggcc
atggcccgcggccggggccgggccgaccgcgccgccgcagcggacgccgccatcgacgca
accggcccggacgcgccgcggcagcgcccgtccgggccgccggcctgggtgatggccgcc
gagctcgtcgagacgtcgcggctgtggggccgcaccgcggcgcggatcgacccggactgg
atcgagccgctggccggacatctcgtgcaccgcagctacagcgagccgcgctggtcccgc
cggcagggggcggtgctcgccgacgagcgggtgacgctgtacggggtgccgatcgtcgcc
ggtcgcccggtgcagtacagccggatcgacccggcgctgtgccgggagctgttcatccgc
cacgccctggtcgagggcgactggcagacccggcacgagttcttccagcacaaccagcgg
ctgctcgccgacgccgaggagctggagcaccgggcgcgccggcgcgacatcgtcgtcgac
gacgaggtgctgttcggcttctacgccgagcggatcccggccgacgtcgtctccgtccgg
cacttcgacgcctggtggcgcaaggcccggcgcggctcccccgacctgctcgactttccc
cgttcgctgctcgtctcggcgggcgcgggcgacgtacgcgagaccgactaccccgacgtc
tggcggctgggcgagctggccctgccgctgagctaccagttcgagccgggggcggcggcc
gacggggtcaccgtgcacattccgttgcccgtgctcaaccaggtgagcgccgagggcttc
gagtggcaggtcccgggcctgcgcgaggagctggtgaccgcgctgatccgcgggctgccg
aaggtggtcaggcgcagcttcgtgccggcgccgaactacgcgcgcgcggtgctcacacac
ctcaccccggggcaggccccgctgctggtcgcggtcgagcacgagctgcgccggatgggc
ggtccggagatcccgcgggattcctggtcgctggccgccgtcccggaccatctgcggatc
accttccgggtcgaggatgctcgcggggcggtgctcgccgagggcaaggacctcgacgcg
atcaagcagcggctgcggccgcggacccgggaggccgtcgccgccgccgcggacggcgtc
gaacggaccgggctgcggtcctgggacggcgtcggcagcctgcccagggtcgtcgagctg
cgccgcggcggccacgtcgtcaaggccttcccggcgctggtcgacgagggcagcaccgtc
gcagtccgggccaccgacaccgagaccgagcagcgccaggcgatgtgggccggcacccgc
cggctcgtgctgctcggcgtcgcctccccgatccgcggcctcaacgggcggctgtccaac
gcggcgaagctggccctgagccacaacccgcaccgcgacgccgccgacctgctcgacgac
tgcgtgcgggccgccgccgaccgcctcatcaccgccgcgggcggcccggcctgggacgag
gcgggcttcaccgcgctgctcgccgcggtgcgcgccggcctgcccgaggcgtcgttcgcg
gtcgtccgcgaagtccagcaggtcctcgcgctcagccacacggtcgacctggcgctgcgg
gacctgcgcgccccggcgttggccgcctcggtcgccgacgcccgcgggcagctcgacgcg
ttgatctaccgcggtttcgtcaccgacaccggcgcggaccggctcgccgacctcgcccgc
tacctcaccgcgctggaacggcggctggaacggctgccccgcgaccccggccgggaccgg
atcaacacggcgacggtcggacgggcgcgggaggcctaccgggagctgctggcgacggtg
ccggcgggtcgcgagccgggcgaggagatccgccgcatccgctggatgctcgaggagctg
cgggtgagcctgttcgcccagaacctgcgcaccccgtaccccgtctccgaggaacgcgtc
taccgcgccatcgacacccttctcggctga
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